SMTL ID : 2ybb.1

Fitted model for bovine mitochondrial supercomplex I1III2IV1 by single particle cryo-EM (EMD-1876)

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY 19.00 Å
Oligo State
hetero-oligomer
Ligands
7 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
1 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)
7 x MG: MAGNESIUM ION(Non-covalent)
4 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
1 x CA: CALCIUM ION(Non-covalent)
5 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
2 x SMA: STIGMATELLIN A(Non-covalent)
2 x UQ1: UBIQUINONE-1(Non-covalent)
2 x HEC: HEME C(Covalent)
4 x CDL: CARDIOLIPIN(Non-covalent)
2 x HEA: HEME-A(Covalent)(Non-covalent)
3 x CU: COPPER (II) ION(Non-covalent)
1 x ZN: ZINC ION(Non-covalent)
Links
RCSB   PDBe   PDBj   PDBsum   CATH   PLIP
Citation
Althoff, T. et al., Arrangement of Electron Transport Chain Components in Bovine Mitochondrial Supercomplex I(1)III(2)Iv(1). Embo J. (2011)
Release Date
2011-10-19
Peptides
NADH-QUINONE OXIDOREDUCTASE SUBUNIT 1: A
NADH-QUINONE OXIDOREDUCTASE SUBUNIT 2: B
NADH-QUINONE OXIDOREDUCTASE SUBUNIT 3: C
NADH-QUINONE OXIDOREDUCTASE SUBUNIT 4: D
NADH-QUINONE OXIDOREDUCTASE SUBUNIT 5: E
NADH-QUINONE OXIDOREDUCTASE SUBUNIT 6: F
NADH-QUINONE OXIDOREDUCTASE SUBUNIT 15: G
NADH-QUINONE OXIDOREDUCTASE SUBUNIT 9: H
CYTOCHROME B-C1 COMPLEX SUBUNIT 1, MITOCHONDRIAL: I7
CYTOCHROME B-C1 COMPLEX SUBUNIT 2, MITOCHONDRIAL: J8
CYTOCHROME B: K9
CYTOCHROME C1, HEME PROTEIN, MITOCHONDRIAL: La
CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL: Mb
CYTOCHROME B-C1 COMPLEX SUBUNIT 7: Nc
CYTOCHROME B-C1 COMPLEX SUBUNIT 8: Od
CYTOCHROME B-C1 COMPLEX SUBUNIT 6, MITOCHONDRIAL: Pe
CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL: Qf
CYTOCHROME B-C1 COMPLEX SUBUNIT 9: Rg
CYTOCHROME B-C1 COMPLEX SUBUNIT 10: Sh
CYTOCHROME C OXIDASE SUBUNIT 1: T
CYTOCHROME C OXIDASE SUBUNIT 2: U
CYTOCHROME C OXIDASE SUBUNIT 3: V
CYTOCHROME C OXIDASE SUBUNIT 4 ISOFORM 1, MITOCHONDRIAL: W
CYTOCHROME C OXIDASE SUBUNIT 5A, MITOCHONDRIAL: X
CYTOCHROME C OXIDASE SUBUNIT 5B, MITOCHONDRIAL: Y
CYTOCHROME C OXIDASE POLYPEPTIDE VIA, CYTOCHROME C OXIDASE POLYPEPTIDE VB: Z
CYTOCHROME C OXIDASE SUBUNIT 6B1: 0
CYTOCHROME C OXIDASE SUBUNIT 6C: 1
CYTOCHROME C OXIDASE SUBUNIT 7A1, MITOCHONDRIAL: 2
CYTOCHROME C OXIDASE SUBUNIT 7B, MITOCHONDRIAL: 3
CYTOCHROME C OXIDASE SUBUNIT 7C, MITOCHONDRIAL: 4
CYTOCHROME C OXIDASE SUBUNIT 8B, MITOCHONDRIAL: 5
CYTOCHROME C: 6
NADH\: UBIQUINONE OXIDOREDUCTASE, MEMBRANE SUBUNIT L,: i
NADH\: UBIQUINONE OXIDOREDUCTASE, MEMBRANE SUBUNIT M,: j
NADH-QUINONE OXIDOREDUCTASE SUBUNIT N: k
NADH-QUINONE OXIDOREDUCTASE SUBUNIT K: l
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
1
B
2
C
3
D
4
E
5
F
6
G
7
H
8
I
A
7
a
J
B
8
b
K
C
9
c
L
D
a
d
M
E
b
e
N
F
c
f
O
G
d
g
P
H
e
h
Q
I
f
i
R
J
g
j
S
K
h
k
T
L
U
M
V
N
W
O
X
P
Y
Q
Z
R
0
S
1
T
2
U
3
V
4
W
5
X
6
Y
i
m
j
n
k
o
l
p

NADH-QUINONE OXIDOREDUCTASE SUBUNIT 1

NADH-QUINONE OXIDOREDUCTASE SUBUNIT 2

NADH-QUINONE OXIDOREDUCTASE SUBUNIT 3

NADH-QUINONE OXIDOREDUCTASE SUBUNIT 4

NADH-QUINONE OXIDOREDUCTASE SUBUNIT 5

NADH-QUINONE OXIDOREDUCTASE SUBUNIT 6

NADH-QUINONE OXIDOREDUCTASE SUBUNIT 15

NADH-QUINONE OXIDOREDUCTASE SUBUNIT 9

CYTOCHROME B-C1 COMPLEX SUBUNIT 1, MITOCHONDRIAL

Toggle Identical (I7)

CYTOCHROME B-C1 COMPLEX SUBUNIT 2, MITOCHONDRIAL

Toggle Identical (J8)

CYTOCHROME B

CYTOCHROME C1, HEME PROTEIN, MITOCHONDRIAL

Toggle Identical (La)

CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL

Toggle Identical (Mb)

CYTOCHROME B-C1 COMPLEX SUBUNIT 7

Toggle Identical (Nc)

CYTOCHROME B-C1 COMPLEX SUBUNIT 8

CYTOCHROME B-C1 COMPLEX SUBUNIT 6, MITOCHONDRIAL

Toggle Identical (Pe)

CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL

Toggle Identical (Qf)

CYTOCHROME B-C1 COMPLEX SUBUNIT 9

Toggle Identical (Rg)

CYTOCHROME B-C1 COMPLEX SUBUNIT 10

Toggle Identical (Sh)

CYTOCHROME C OXIDASE SUBUNIT 1

CYTOCHROME C OXIDASE SUBUNIT 2

CYTOCHROME C OXIDASE SUBUNIT 3

CYTOCHROME C OXIDASE SUBUNIT 4 ISOFORM 1, MITOCHONDRIAL

CYTOCHROME C OXIDASE SUBUNIT 5A, MITOCHONDRIAL

CYTOCHROME C OXIDASE SUBUNIT 5B, MITOCHONDRIAL

CYTOCHROME C OXIDASE POLYPEPTIDE VIA, CYTOCHROME C OXIDASE POLYPEPTIDE VB

CYTOCHROME C OXIDASE SUBUNIT 6B1

CYTOCHROME C OXIDASE SUBUNIT 6C

CYTOCHROME C OXIDASE SUBUNIT 7A1, MITOCHONDRIAL

CYTOCHROME C OXIDASE SUBUNIT 7B, MITOCHONDRIAL

CYTOCHROME C OXIDASE SUBUNIT 7C, MITOCHONDRIAL

CYTOCHROME C OXIDASE SUBUNIT 8B, MITOCHONDRIAL

CYTOCHROME C

NADH\: UBIQUINONE OXIDOREDUCTASE, MEMBRANE SUBUNIT L,

NADH\: UBIQUINONE OXIDOREDUCTASE, MEMBRANE SUBUNIT M,

NADH-QUINONE OXIDOREDUCTASE SUBUNIT N

NADH-QUINONE OXIDOREDUCTASE SUBUNIT K

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