SMTL ID : 6znv.1

Protein polybromo-1 (PB1 BD2) Bound To DP28

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.14 Å

Oligo State

monomer

Ligands

1 x QMW: 1-[3-azanyl-6-(2-hydroxyphenyl)pyridazin-4-yl]piperidin-4-ol(Non-covalent)

QMW.1: 12 residues within 4Å: Chain A: L.32, F.33, K.35, L.36, P.37, Y.42, Y.45, I.53, A.84, Y.87, N.88, V.94 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.42 Hydrogen bonds: A:Y.42, A:N.88, A:N.88 Water bridges: A:Y.42 pi-Stacking: A:F.33

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 2 residues within 4Å: Chain A: H.71 Ligands: CL.5 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.71 ZN.3: 2 residues within 4Å: Chain A: H.115, E.116 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.115, A:E.116

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 3 residues within 4Å: Chain A: K.39, V.40, P.43 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.39

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 4 residues within 4Å: Chain A: H.71, A.74, K.109 Ligands: ZN.2 Ligand excluded by PLIP

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.6: 2 residues within 4Å: Chain A: E.113, H.114 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.114

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wanior, M. et al., Pan-SMARCA/PB1 Bromodomain Inhibitors and Their Role in Regulating Adipogenesis. J.Med.Chem. (2020)

Release Date

2020-08-26

Peptides

Protein polybromo-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein polybromo-1

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