SMTL ID : 6zpx.1

Structure of Unliganded MgGH51 a-L-Arabinofuranosidase Crystal Type 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 6 residues within 4Å: Chain A: W.386, V.389, V.393, Q.419, N.421, T.423 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 6 residues within 4Å: Chain A: W.102, V.486, N.487, D.499, P.591, E.592 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:P.591 Hydrogen bonds: A:E.592, A:E.592 NAG-NAG.4: 7 residues within 4Å: Chain A: Q.144, N.145, N.160, L.161, E.162, L.163, H.164 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.3: 9 residues within 4Å: Chain A: R.241, Q.243, N.245, A.246, P.255, P.307, Y.308, Q.311, D.314 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:P.307, A:Y.308 Hydrogen bonds: A:R.241, A:R.241 Water bridges: A:Q.243, A:Y.308

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 5 residues within 4Å: Chain A: T.404, P.405, T.406, T.435, Q.455 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McGregor, N.G.S. et al., Structure of a GH51 alpha-L-arabinofuranosidase from Meripilus giganteus: conserved substrate recognition from bacteria to fungi. Acta Crystallogr D Struct Biol (2020)

Release Date

2020-11-11

Peptides

MgGH51: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

MgGH51

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