SMTL ID : 6zuc.1

X-RAY CRYSTAL STRUCTURE OF THE CsPYL1-Lig1-HAB1 TERNARY COMPLEX

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.37 Å

Oligo State

hetero-1-1-mer

Ligands

1 x QPZ: 1,4-dimethyl-2-oxidanylidene-~{N}-(phenylmethyl)quinoline-6-sulfonamide(Non-covalent)

QPZ.1: 19 residues within 4Å: Chain A: K.88, H.89, F.90, I.91, V.110, V.112, L.116, P.117, A.118, S.121, E.123, F.137, I.139, H.144, L.146, Y.149, F.188, V.192, N.196 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.112, A:A.118, A:I.139, A:H.144, A:L.146, A:V.192 Hydrogen bonds: A:E.123 pi-Stacking: A:Y.149

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 3 residues within 4Å: Chain B: D.120, E.124, G.223 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.120, B:E.124, B:G.223, H2O.2, H2O.4 MN.3: 3 residues within 4Å: Chain B: D.65, G.66 Ligands: MN.4 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.65, B:G.66, H2O.2, H2O.3, H2O.5 MN.4: 4 residues within 4Å: Chain B: D.65, D.254, D.314 Ligands: MN.3 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.65, B:D.254, B:D.314, H2O.2, H2O.4 MN.5: 3 residues within 4Å: Chain B: K.187, D.254, D.258 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.254, B:D.258, H2O.4, H2O.5, H2O.5

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 2 residues within 4Å: Chain B: R.271, R.272 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain B: R.21, S.22 Ligand excluded by PLIP CL.8: 4 residues within 4Å: Chain B: R.272, M.275, W.276, A.298 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain B: G.69, H.70, K.71 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain B: D.189, Y.194, Q.206 Ligand excluded by PLIP CL.11: 2 residues within 4Å: Chain B: Q.107, K.110 Ligand excluded by PLIP

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.12: 3 residues within 4Å: Chain A: K.194 Chain B: Y.226, Y.230 No protein-ligand interaction detected (PLIP) GOL.13: 4 residues within 4Å: Chain B: R.170, W.257, D.258, M.260 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:W.257 Water bridges: B:R.170, B:R.170, B:W.257 GOL.14: 1 residues within 4Å: Chain B: L.53 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lozano-Juste, J. et al., Structure-guided engineering of a receptor-agonist pair for inducible activation of the ABA adaptive response to drought. Sci Adv (2023)

Release Date

2021-08-04

Peptides

CSPYL1: A
Protein phosphatase 2C 16: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

CSPYL1

Protein phosphatase 2C 16

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