SMTL ID : 6zwf.1

Neisseria gonorrhoeae transaldolase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.05 Å

Oligo State

monomer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 12 residues within 4Å: Chain A: D.18, T.42, S.43, N.44, I.47, K.139, N.161, T.163, S.200, F.202, A.259 Ligands: CIT.2 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.18, A:T.42, A:N.44, A:K.139, A:T.163 Water bridges: A:N.161

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.2: 11 residues within 4Å: Chain A: D.18, N.44, A.46, I.47, F.202, R.205, A.259, S.260, T.285, F.340 Ligands: EDO.1 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:F.202 Hydrogen bonds: A:N.44, A:S.260, A:S.260, A:S.260, A:S.260 Water bridges: A:N.44, A:K.50, A:R.205, A:R.205, A:R.205, A:T.261, A:T.261, A:G.262, A:K.264 Salt bridges: A:R.205, A:R.205

4 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.3: 8 residues within 4Å: Chain A: R.168, K.228, A.229, Q.232, A.308, A.311, R.312, L.315 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.168 Water bridges: A:R.168, A:R.168 BME.4: 6 residues within 4Å: Chain A: T.213, L.214, P.215, L.321, G.322, I.323 No protein-ligand interaction detected (PLIP) BME.6: 6 residues within 4Å: Chain A: P.111, E.112, A.114, K.115, L.337, E.341 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.115 BME.7: 5 residues within 4Å: Chain A: A.209, L.210, T.213, I.323, R.331 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.331 Water bridges: A:R.331

1 x OXY: OXYGEN MOLECULE(Non-covalent)

OXY.5: 8 residues within 4Å: Chain A: L.5, K.9, Q.13, Q.14, I.15, G.37, V.38, C.39 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.15, A:G.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wensien, M. et al., A lysine-cysteine redox switch with an NOS bridge regulates enzyme function. Nature (2021)

Release Date

2021-03-24

Peptides

Transaldolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Transaldolase

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