SMTL ID : 6zyf.2 (1 other biounit)

Notum_Ghrelin complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.19 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: N.19, S.21, V.22, S.116 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.19, A:S.116

1 x K4Q: [(2~{S})-2-azanyl-3-oxidanylidene-propyl] octanoate(Non-covalent)

K4Q.2: 9 residues within 4Å: Chain A: G.50, W.51, Y.52, A.155, A.156, F.191, F.243, A.265, H.312 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Y.52, A:F.191, A:F.191, A:F.191, A:F.243, A:A.265 Hydrogen bonds: A:G.50, A:W.51, A:A.156 Salt bridges: A:H.312

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 6 residues within 4Å: Chain A: D.166, R.167, E.170, P.226, E.227, R.228 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.167, A:E.227, A:R.228, A:R.228 EDO.4: 5 residues within 4Å: Chain A: Y.248, L.251, S.253, P.254, V.255 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.248, A:S.253, A:V.255

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, Y. et al., Notum deacylates octanoylated ghrelin. Mol Metab (2021)

Release Date

2021-03-10

Peptides

Palmitoleoyl-protein carboxylesterase NOTUM: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Palmitoleoyl-protein carboxylesterase NOTUM

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