SMTL ID : 7a0k.1 (7 other biounits)

Crystal structure of the entire ectodomain from the Physcomitrella patens receptor kinase CR4

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUC.1: 4 residues within 4Å: Chain A: Y.120, N.121, G.155, D.156 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.121

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 6 residues within 4Å: Chain A: I.127, N.128, A.129, F.145, N.148, T.150 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.127, A:A.129

1 x MLT: D-MALATE(Non-covalent)

MLT.3: 8 residues within 4Å: Chain A: L.102, R.103, Q.104, S.105, Y.108, P.130, L.131, L.132 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.104, A:S.105, A:L.131

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 4 residues within 4Å: Chain A: G.289, T.300, C.327, N.329 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:T.300 Hydrogen bonds: A:G.289 Water bridges: A:N.329

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 7 residues within 4Å: Chain A: K.218, F.219, S.220, F.236, D.257, Y.258, S.276 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.220, A:F.236, A:D.257 EDO.6: 8 residues within 4Å: Chain A: L.1, A.8, V.9, Y.11, T.52, G.53, V.254, A.255 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.1, A:L.1, A:V.9, A:G.53 Water bridges: A:T.52 EDO.7: 2 residues within 4Å: Chain A: E.306, K.309 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.309

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Okuda, S. et al., Crystal structures of Arabidopsis and Physcomitrella CR4 reveal the molecular architecture of CRINKLY4 receptor kinases. To Be Published

Release Date

2021-08-18

Peptides

Predicted protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Predicted protein

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