SMTL ID : 7a0k.2 (7 other biounits)

Crystal structure of the entire ectodomain from the Physcomitrella patens receptor kinase CR4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUC.1: 4 residues within 4Å: Chain A: Y.120, N.121, G.155, D.156 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.155, A:Y.120, A:N.121 Water bridges: A:D.156, A:D.156

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.2: 6 residues within 4Å: Chain A: I.127, N.128, A.129, F.145, N.148, T.150 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.127, A:A.129

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 5 residues within 4Å: Chain A: N.14, D.55, N.73, N.74, N.97 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.14 EDO.4: 7 residues within 4Å: Chain A: F.57, W.71, G.72, N.73, N.74, V.77, A.79 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.74 EDO.6: 3 residues within 4Å: Chain A: L.102, R.103, L.131 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.131

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 3 residues within 4Å: Chain A: G.289, C.327, N.329 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.329

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Okuda, S. et al., Crystal structures of Arabidopsis and Physcomitrella CR4 reveal the molecular architecture of CRINKLY4 receptor kinases. To Be Published

Release Date

2021-08-18

Peptides

Predicted protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Predicted protein

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