SMTL ID : 7a34.1

Intertwined dimer of the c-Src SH3 domain mutant V111L-N113S-T114S

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.1: 15 residues within 4Å: Chain A: Y.11, R.14, T.15, T.17, D.18, W.37, Y.50 Chain B: Y.11, R.14, T.15, T.17, D.18, W.37, Y.50 Ligands: PGE.4 8 PLIP interactions: 3 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:R.14, A:R.14, B:Y.11, B:R.14, B:R.14, B:D.18 Water bridges: A:T.15, B:T.15 PGE.4: 15 residues within 4Å: Chain A: Y.11, R.14, T.15, T.17, D.18, W.37, Y.50 Chain B: Y.11, R.14, T.15, T.17, D.18, W.37, Y.50 Ligands: PGE.1 7 PLIP interactions: 4 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:Y.11, A:R.14, A:R.14, B:R.14, B:R.14 Water bridges: A:T.15, B:T.15

4 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 2 residues within 4Å: Chain A: K.23 Ligands: PEG.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.23 PEG.3: 3 residues within 4Å: Chain A: K.23, G.24 Ligands: PEG.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.23 PEG.5: 2 residues within 4Å: Chain B: K.23 Ligands: PEG.6 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.23 PEG.6: 3 residues within 4Å: Chain B: K.23, G.24 Ligands: PEG.5 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.23

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Camara-Artigas, A. et al., Intertwined dimer of the c-Src SH3 domain mutant V111L-N113S-T114S. To be published

Release Date

2021-08-25

Peptides

Proto-oncogene tyrosine-protein kinase Src: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Proto-oncogene tyrosine-protein kinase Src

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