SMTL ID : 7a3q.1

Crystal structure of dengue 4 virus envelope glycoprotein in complex with the scFv fragment of the broadly neutralizing human antibody EDE1 C10

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-2-2-2-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: N.67, Y.90 Chain C: Q.67 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:Q.67, A:N.67 NAG.2: 3 residues within 4Å: Chain B: N.67 Chain D: Q.67, D.68 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:Q.67

2 x 3CX: (2S)-3-(cyclohexylamino)-2-hydroxypropane-1-sulfonic acid(Non-covalent)

3CX.3: 9 residues within 4Å: Chain C: G.44, Q.45 Chain E: A.14, D.93, Y.95, G.109, G.110, T.111, K.112 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:G.44, C:Q.45 3CX.4: 9 residues within 4Å: Chain D: G.44, Q.45 Chain F: A.14, D.93, Y.95, G.109, G.110, T.111, K.112 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:G.44, D:Q.45

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sharma, A. et al., The epitope arrangement on flavivirus particles contributes to Mab C10's extraordinary neutralization breadth across Zika and dengue viruses. Cell (2021)

Release Date

2021-12-08

Peptides

Envelope protein E: AB
Single Chain Variable Fragment: CD
Single Chain Variable Fragment: EF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
H

D
I

E
L

F
M

Envelope protein E

Single Chain Variable Fragment

Single Chain Variable Fragment

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