SMTL ID : 7cth.1 (3 other biounits)

Cryo-EM structure of dengue virus serotype 2 in complex with the scFv fragment of the broadly neutralizing antibody EDE1 C10

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-2-2-mer

Ligands

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 1 residues within 4Å: Chain A: N.67 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.67 NAG.2: 3 residues within 4Å: Chain A: H.149, N.153, H.158 No protein-ligand interaction detected (PLIP) NAG.3: 3 residues within 4Å: Chain B: N.67 Chain G: Q.67, D.68 4 PLIP interactions: 3 interactions with chain G, 1 interactions with chain B Hydrogen bonds: G:Q.67, G:Q.67, G:D.68, B:N.67 NAG.4: 3 residues within 4Å: Chain C: N.67, M.118 Chain I: Q.67 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain I Hydrogen bonds: C:N.67, I:D.68

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sharma, A. et al., The epitope arrangement on flavivirus particles contributes to Mab C10's extraordinary neutralization breadth across Zika and dengue viruses. Cell (2021)

Release Date

2021-12-01

Peptides

Core protein: ABC
Core protein: DEF
Single Chain Variable Fragment: GI
Single Chain Variable Fragment: HJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
F

E
D

F
E

G
I

I
H

H
M

J
L

Core protein

Core protein

Single Chain Variable Fragment

Single Chain Variable Fragment

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