SMTL ID : 7a4d.1 (1 other biounit)

Crystal structure of the APH coiled-coil in complex with nanobodies Nb28 and Nb30

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.69 Å

Oligo State

hetero-2-2-2-mer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: Y.60, K.65, G.66, F.68, T.69 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.66, A:T.69 EDO.2: 5 residues within 4Å: Chain B: Y.60, K.65, G.66, F.68, T.69 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.66, B:T.69

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 2 residues within 4Å: Chain D: R.19, S.21 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:S.21, D:S.21

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Majerle, A. et al., A nanobody toolbox targeting dimeric coiled-coil modules for functionalization of designed protein origami structures. Proc.Natl.Acad.Sci.USA (2021)

Release Date

2021-05-05

Peptides

Nanobody Nb28: AB
Nanobody Nb30: CD
APH coiled-coil: EF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Nanobody Nb28

Nanobody Nb30

APH coiled-coil

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