SMTL ID : 7ael.1

alpha 1-antitrypsin (C232S) complexed with GSK716

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

monomer

Ligands

1 x R7Z: ~{N}-[(1~{S},2~{R})-1-(3-fluoranyl-2-methyl-phenyl)-1-oxidanyl-pentan-2-yl]-2-oxidanylidene-1,3-dihydroindole-4-carboxamide(Non-covalent)

R7Z.1: 16 residues within 4Å: Chain A: K.203, W.204, M.231, Y.254, F.262, L.298, P.299, K.300, L.301, I.303, L.348, I.350, F.376, F.380, F.382, M.384 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:W.204, A:M.231, A:Y.254, A:F.262, A:F.262, A:K.300, A:K.300, A:I.303, A:I.350, A:F.376, A:F.380 Hydrogen bonds: A:W.204, A:Y.254, A:P.299, A:L.301, A:L.301 pi-Stacking: A:W.204, A:W.204, A:F.262, A:F.382

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: R.206, F.237, M.252, K.253, R.291 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:K.253 Water bridges: A:R.206, A:R.233, A:R.291, A:R.291, A:R.291, A:R.291 Salt bridges: A:R.206, A:R.291

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lomas, D.A. et al., Development of a small molecule that corrects misfolding and increases secretion of Z alpha 1 -antitrypsin. Embo Mol Med (2021)

Release Date

2021-03-10

Peptides

Alpha-1-antitrypsin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Alpha-1-antitrypsin

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