SMTL ID : 7agh.2 (1 other biounit)

Crystal structure of SF kinase YihV from E. coli in complex with AMPPNP-Mg

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.93 Å

Oligo State

homo-dimer

Ligands

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 23 residues within 4Å: Chain A: R.105, D.162, S.181, T.212, Q.213, G.214, S.215, G.217, A.231, F.232, V.236, T.239, G.241, A.242, G.243, D.244, F.246, S.268, A.271, A.272, C.275 Chain B: K.27 Ligands: MG.2 12 PLIP interactions: 11 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.105, A:D.162, A:T.212, A:T.212, A:Q.213, A:G.214, A:G.241, A:G.243, A:D.244, A:D.244, A:S.268, B:K.27 ANP.3: 18 residues within 4Å: Chain B: S.181, T.212, Q.213, G.214, S.215, G.217, A.231, F.232, V.236, T.239, G.241, A.242, G.243, D.244, F.246, S.268, A.271 Ligands: MG.4 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:T.212, B:T.212, B:G.214, B:G.241, B:A.242, B:G.243, B:D.244, B:S.268

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: R.105 Ligands: ANP.1 No protein-ligand interaction detected (PLIP) MG.4: 2 residues within 4Å: Chain B: D.162 Ligands: ANP.3 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.162

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sharma, M. et al., Molecular Basis of Sulfosugar Selectivity in Sulfoglycolysis. Acs Cent.Sci. (2021)

Release Date

2021-04-14

Peptides

Sulfofructose kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Sulfofructose kinase

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