SMTL ID : 7ahz.1 (5 other biounits)

Crystal structure of Western clawed frog MDM2 RING domain homodimer bound to UbcH5B-Ub

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.82 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: C.18, I.20, C.21, R.24, C.41, C.44 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.18, A:C.21, A:C.41, A:C.44 ZN.2: 5 residues within 4Å: Chain A: H.32, H.37, C.55, V.57, C.58 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.32, A:H.37, A:C.55, A:C.58 ZN.3: 6 residues within 4Å: Chain B: C.18, I.20, C.21, R.24, C.41, C.44 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.18, B:C.21, B:C.41, B:C.44 ZN.4: 5 residues within 4Å: Chain B: H.32, H.37, C.55, V.57, C.58 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.32, B:H.37, B:C.55, B:C.58

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Magnussen, H.M. et al., Identification of a Catalytic Active but Non-Aggregating MDM2 RING Domain Variant. J.Mol.Biol. (2021)

Release Date

2021-01-20

Peptides

E3 ubiquitin-protein ligase Mdm2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

B
DDD

E3 ubiquitin-protein ligase Mdm2

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