SMTL ID : 7ao5.1

Crystal structure of CotB2 variant W288F

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.06 Å

Oligo State

homo-dimer

Ligands

3 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 7 residues within 4Å: Chain A: V.80, F.107, I.181, W.186, L.216, N.220, L.281 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.80, A:F.107, A:W.186, A:L.281 Hydrogen bonds: A:N.220 MPD.2: 5 residues within 4Å: Chain A: E.140, E.144 Chain B: E.140, V.141, E.144 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:E.140, A:E.140, A:E.144 Water bridges: B:E.140, B:E.144 MPD.5: 6 residues within 4Å: Chain B: F.107, I.181, W.186, L.216, N.220, N.285 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:F.107 Hydrogen bonds: B:N.220, B:N.285

4 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain A: R.177, N.220, S.224, E.228 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:S.224, A:E.228, H2O.1, H2O.6, H2O.6 MG.4: 2 residues within 4Å: Chain A: D.110, D.153 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.110, H2O.2, H2O.2, H2O.3, H2O.3 MG.6: 3 residues within 4Å: Chain B: N.220, S.224, E.228 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:S.224, B:E.228, H2O.8, H2O.12, H2O.12 MG.7: 1 residues within 4Å: Chain B: D.110 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Raz, K. et al., The Impression of a Nonexisting Catalytic Effect: The Role of CotB2 in Guiding the Complex Biosynthesis of Cyclooctat-9-en-7-ol. J.Am.Chem.Soc. (2020)

Release Date

2020-12-02

Peptides

Cyclooctat-9-en-7-ol synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cyclooctat-9-en-7-ol synthase

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