SMTL ID : 7at3.1 (1 other biounit)

Structure of EstD11 in complex with Naproxen and methanol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

6 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 3 residues within 4Å: Chain A: P.115, L.216 Ligands: FMT.5 No protein-ligand interaction detected (PLIP) FMT.2: 4 residues within 4Å: Chain A: S.3, P.278, E.279, Q.282 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.3, A:Q.282 Water bridges: A:E.279 FMT.3: 4 residues within 4Å: Chain A: T.7, V.10, N.11, R.14 No protein-ligand interaction detected (PLIP) FMT.4: 5 residues within 4Å: Chain A: P.135, K.136, L.164, P.165, A.166 No protein-ligand interaction detected (PLIP) FMT.5: 6 residues within 4Å: Chain A: T.122, R.126, A.156, L.157, A.160 Ligands: FMT.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.122, A:R.126 FMT.6: 2 residues within 4Å: Chain A: I.180, R.213 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.213, A:R.213

1 x NPX: (2R)-2-(6-methoxynaphthalen-2-yl)propanoic acid(Non-covalent)

NPX.7: 14 residues within 4Å: Chain A: L.31, M.34, A.35, G.75, G.76, T.85, H.86, D.143, S.144, M.193, V.269, A.272, F.273 Ligands: MOH.8 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.31, A:A.272 Hydrogen bonds: A:G.75, A:H.268 Water bridges: A:S.38 Salt bridges: A:H.86

1 x MOH: METHANOL(Non-functional Binders)

MOH.8: 7 residues within 4Å: Chain A: G.75, G.76, G.77, S.144, A.145, H.268 Ligands: NPX.7 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.76, A:G.77, A:S.144

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Miguel-Ruano, V. et al., Biochemical and Structural Characterization of a novel thermophilic esterase EstD11 provide catalytic insights for the HSL family. Comput Struct Biotechnol J (2021)

Release Date

2021-03-03

Peptides

EstD11: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

EstD11

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