SMTL ID : 7bdk.1

Human Brr2 Helicase Region in complex with C-tail deleted Jab1 and ADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.52 Å

Oligo State

hetero-1-1-mer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 15 residues within 4Å: Chain A: F.89, T.91, L.92, N.93, Q.96, P.115, T.116, G.117, A.118, G.119, K.120, T.121, N.122, N.431 Ligands: MG.3 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:T.91, A:N.93, A:N.93, A:Q.96, A:G.117, A:A.118, A:G.119, A:K.120, A:T.121, A:T.121, A:T.121, A:N.122, A:N.431 Water bridges: A:N.122, A:R.466 Salt bridges: A:K.120 pi-Stacking: A:F.89 ADP.2: 15 residues within 4Å: Chain A: F.936, F.938, F.939, N.940, Q.943, P.962, T.963, G.964, S.965, G.966, K.967, T.968, I.969, P.1305 Ligands: MG.4 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:F.938, A:N.940, A:N.940, A:Q.943, A:G.964, A:S.965, A:G.966, A:K.967, A:T.968, A:T.968, A:T.968 Water bridges: A:K.967, A:E.1066 Salt bridges: A:K.967 pi-Stacking: A:F.936

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 2 residues within 4Å: Chain A: T.121 Ligands: ADP.1 No protein-ligand interaction detected (PLIP) MG.4: 3 residues within 4Å: Chain A: D.1065, E.1066 Ligands: ADP.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Absmeier, E. et al., Long-range allostery mediates cooperative adenine nucleotide binding by the Ski2-like RNA helicase Brr2. J.Biol.Chem. (2021)

Release Date

2021-06-09

Peptides

U5 small nuclear ribonucleoprotein 200 kDa helicase: A
Pre-mRNA-processing-splicing factor 8: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
J

U5 small nuclear ribonucleoprotein 200 kDa helicase

Pre-mRNA-processing-splicing factor 8

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