SMTL ID : 7bdl.1

Human Brr2 Helicase Region in complex with C-tail deleted Jab1 and mant-ADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.69 Å

Oligo State

hetero-1-1-mer

Ligands

2 x TG8: [(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-2-[[oxidanyl(phosphonooxy)phosphoryl]oxymethyl]oxolan-3-yl] 2-(methylamino)benzoate(Non-covalent)

TG8.1: 16 residues within 4Å: Chain A: F.89, T.91, L.92, N.93, Q.96, P.115, T.116, G.117, A.118, G.119, K.120, T.121, N.122, N.431, Q.471 Ligands: MG.3 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:F.89, A:F.89 Hydrogen bonds: A:N.93, A:Q.96, A:Q.96, A:G.117, A:A.118, A:G.119, A:K.120, A:T.121, A:T.121, A:N.122, A:N.431 Water bridges: A:K.120, A:K.120, A:K.120 Salt bridges: A:K.120 pi-Stacking: A:F.89, A:F.89 TG8.2: 18 residues within 4Å: Chain A: F.936, F.938, F.939, N.940, Q.943, P.962, T.963, G.964, S.965, G.966, K.967, T.968, I.969, N.1266, V.1267, N.1303, P.1305 Ligands: MG.4 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:F.938, A:N.940, A:N.940, A:Q.943, A:G.964, A:S.965, A:G.966, A:K.967, A:T.968, A:T.968, A:N.1303 Water bridges: A:K.967, A:K.967, A:K.967, A:I.969 Salt bridges: A:K.967

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 3 residues within 4Å: Chain A: T.121, D.226 Ligands: TG8.1 No protein-ligand interaction detected (PLIP) MG.4: 2 residues within 4Å: Chain A: T.968 Ligands: TG8.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Absmeier, E. et al., Long-range allostery mediates cooperative adenine nucleotide binding by the Ski2-like RNA helicase Brr2. J.Biol.Chem. (2021)

Release Date

2021-06-09

Peptides

U5 small nuclear ribonucleoprotein 200 kDa helicase: A
Pre-mRNA-processing-splicing factor 8: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
J

U5 small nuclear ribonucleoprotein 200 kDa helicase

Pre-mRNA-processing-splicing factor 8

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