SMTL ID : 7bl1.1

human complex II-BATS bound to membrane-attached Rab5a-GTP

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 9.80 Å

Oligo State

hetero-1-1-1-1-1-1-mer

Ligands

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.1: 24 residues within 4Å: Chain F: E.13, S.14, A.15, V.16, G.17, K.18, S.19, S.20, F.30, H.31, E.32, Q.34, S.36, T.37, A.62, G.63, N.118, K.119, D.121, L.122, S.148, A.149, K.150 Ligands: MG.2 21 PLIP interactions: 21 interactions with chain F Hydrogen bonds: F:A.15, F:V.16, F:G.17, F:K.18, F:S.19, F:S.20, F:S.20, F:H.31, F:T.37, F:G.63, F:N.118, F:K.119, F:K.119, F:S.148, F:A.149, F:K.150 Salt bridges: F:K.18, F:K.18, F:D.121 pi-Stacking: F:F.30, F:F.30

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain F: S.19, T.37 Ligands: GTP.1 2 PLIP interactions: 2 interactions with chain F Metal complexes: F:S.19, F:T.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tremel, S. et al., Structural basis for VPS34 kinase activation by Rab1 and Rab5 on membranes. Nat Commun (2021)

Release Date

2021-03-03

Peptides

UV radiation resistance-associated gene protein: A
Phosphatidylinositol 3-kinase catalytic subunit type 3: B
Phosphoinositide 3-kinase regulatory subunit 4: C
Beclin-1: D
unknown peptide: E
Ras-related protein Rab-5A: F

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

B
BBB

C
CCC

D
EEE

E
FFF

F
DDD

UV radiation resistance-associated gene protein

Phosphatidylinositol 3-kinase catalytic subunit type 3

Phosphoinositide 3-kinase regulatory subunit 4

Beclin-1

unknown peptide

Ras-related protein Rab-5A

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