SMTL ID : 7blo.1

VPS26 dimer region of metazoan membrane-assembled retromer:SNX3 complex modelled with human proteins

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-mer

Ligands

2 x PIB: 2-(BUTANOYLOXY)-1-{[(HYDROXY{[2,3,4,6-TETRAHYDROXY-5-(PHOSPHONOOXY)CYCLOHEXYL]OXY}PHOSPHORYL)OXY]METHYL}ETHYL BUTANOATE(Covalent)

PIB.1: 11 residues within 4Å: Chain B: F.43, R.67, Y.68, S.69, E.72, K.92, A.93, F.94, Q.97, I.106, R.115 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:F.94 Hydrogen bonds: B:Y.68, B:S.69, B:A.93, B:Q.97, B:R.115, B:R.115 Salt bridges: B:R.67, B:K.92, B:K.92 PIB.2: 11 residues within 4Å: Chain E: F.43, R.67, Y.68, S.69, E.72, K.92, A.93, F.94, Q.97, I.106, R.115 10 PLIP interactions: 10 interactions with chain E Hydrophobic interactions: E:F.94 Hydrogen bonds: E:Y.68, E:S.69, E:A.93, E:Q.97, E:R.115, E:R.115 Salt bridges: E:R.67, E:K.92, E:K.92

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Leneva, N. et al., Architecture and mechanism of metazoan retromer:SNX3 tubular coat assembly. Sci Adv (2021)

Release Date

2021-03-03

Peptides

Vacuolar protein sorting-associated protein 26A: AD
Sorting nexin-3: BE
C-term (residues 493-54) of Wls (fitted sequence corresponds to hDMT1-II): CF
Vacuolar protein sorting-associated protein 35: GH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
J

D
F

B
L

E
G

C
N

F
H

G
A

H
C

Vacuolar protein sorting-associated protein 26A

Sorting nexin-3

C-term (residues 493-54) of Wls (fitted sequence corresponds to hDMT1-II)

Vacuolar protein sorting-associated protein 35

Related Entries With Identical Sequence