SMTL ID : 7blq.1

Vps26 dimer region of the fungal membrane-assembled retromer:Grd19 complex.

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-mer

Ligands

2 x PIB: 2-(BUTANOYLOXY)-1-{[(HYDROXY{[2,3,4,6-TETRAHYDROXY-5-(PHOSPHONOOXY)CYCLOHEXYL]OXY}PHOSPHORYL)OXY]METHYL}ETHYL BUTANOATE(Non-covalent)

PIB.1: 9 residues within 4Å: Chain C: R.47, Y.48, S.49, E.52, K.73, V.74, F.75, R.78, R.87 11 PLIP interactions: 11 interactions with chain C Hydrophobic interactions: C:F.75 Hydrogen bonds: C:S.49, C:K.73, C:K.73, C:V.74, C:R.78, C:R.78, C:R.87, C:R.87 Salt bridges: C:R.47, C:K.73 PIB.2: 9 residues within 4Å: Chain F: R.47, Y.48, S.49, E.52, K.73, V.74, F.75, R.78, R.87 11 PLIP interactions: 11 interactions with chain F Hydrophobic interactions: F:F.75 Hydrogen bonds: F:S.49, F:K.73, F:K.73, F:V.74, F:R.78, F:R.78, F:R.87, F:R.87 Salt bridges: F:R.47, F:K.73

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Leneva, N. et al., Architecture and mechanism of metazoan retromer:SNX3 tubular coat assembly. Sci Adv (2021)

Release Date

2021-03-03

Peptides

Vacuolar protein sorting-associated protein 35: AB
Sorting nexin-3: CF
Vacuolar protein sorting-associated protein 26-like protein: DE
The C-terminal portion of Kex2 cargo, fitted with Phi-X-(L/M) sorting motif of hDMT1-II cargo.: GH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
A

C
G

F
L

D
J

E
F

G
V

H
U

Vacuolar protein sorting-associated protein 35

Sorting nexin-3

Vacuolar protein sorting-associated protein 26-like protein

The C-terminal portion of Kex2 cargo, fitted with Phi-X-(L/M) sorting motif of hDMT1-II cargo.

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