SMTL ID : 7bmh.1 (1 other biounit)

Crystal structure of a light-driven proton pump LR (Mac) from Leptosphaeria maculans

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

22 x LFA: EICOSANE(Non-covalent)(Non-functional Binders)

LFA.1: 4 residues within 4Å: Chain A: W.56, V.57, V.60, I.64 Ligand excluded by PLIP LFA.3: 4 residues within 4Å: Chain A: L.170, I.171, L.174 Ligands: OLA.12 Ligand excluded by PLIP LFA.4: 4 residues within 4Å: Chain A: A.141, P.145, L.149 Ligands: OLA.12 Ligand excluded by PLIP LFA.5: 2 residues within 4Å: Chain A: L.82, I.89 Ligand excluded by PLIP LFA.6: 5 residues within 4Å: Chain A: T.54, V.57, V.267, L.268, V.272 Ligand excluded by PLIP LFA.7: 3 residues within 4Å: Chain A: Y.134, I.138, L.177 Ligand excluded by PLIP LFA.8: 4 residues within 4Å: Chain A: Y.193, Y.200, P.241, G.245 Ligand excluded by PLIP LFA.9: 4 residues within 4Å: Chain A: Y.193, C.197, I.198, I.201 Ligand excluded by PLIP LFA.10: 4 residues within 4Å: Chain A: Y.232, W.276, T.280 Ligands: LFA.16 Ligand excluded by PLIP LFA.11: 2 residues within 4Å: Chain A: A.199, F.202 Ligand excluded by PLIP LFA.14: 2 residues within 4Å: Chain A: V.264, L.265 Ligand excluded by PLIP LFA.15: 4 residues within 4Å: Chain A: S.66, A.67, T.70, T.88 Ligand excluded by PLIP LFA.16: 3 residues within 4Å: Chain A: A.275 Ligands: LFA.10, LFA.17 Ligand excluded by PLIP LFA.17: 1 residues within 4Å: Ligands: LFA.16 Ligand excluded by PLIP LFA.18: 1 residues within 4Å: Chain A: W.56 Ligand excluded by PLIP LFA.19: 2 residues within 4Å: Chain A: L.92, T.93 Ligand excluded by PLIP LFA.20: 1 residues within 4Å: Chain A: A.67 Ligand excluded by PLIP LFA.21: 2 residues within 4Å: Chain A: A.141, L.174 Ligand excluded by PLIP LFA.22: 1 residues within 4Å: Chain A: L.72 Ligand excluded by PLIP LFA.23: 1 residues within 4Å: Chain A: L.246 Ligand excluded by PLIP LFA.24: 4 residues within 4Å: Chain A: K.221, S.224, F.225, A.228 Ligand excluded by PLIP LFA.25: 5 residues within 4Å: Chain A: V.208, V.227, G.230, T.233, L.234 Ligand excluded by PLIP

3 x OLA: OLEIC ACID(Non-covalent)

OLA.2: 10 residues within 4Å: Chain A: T.93, L.96, S.97, A.100, H.105, G.106, Y.134, A.135, I.138, D.139 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.96, A:A.100, A:A.135, A:I.138, A:D.139 Hydrogen bonds: A:G.106, A:Y.134 Salt bridges: A:H.105 OLA.12: 8 residues within 4Å: Chain A: L.153, M.157, G.159, I.162, F.163, I.166 Ligands: LFA.3, LFA.4 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.162, A:I.162, A:F.163, A:I.166 OLA.13: 2 residues within 4Å: Chain A: Y.134, I.138 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.138 Water bridges: A:Y.134

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zabelskii, D. et al., Structure-based insights into evolution of rhodopsins. Commun Biol (2021)

Release Date

2021-07-07

Peptides

Opsin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Opsin

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