SMTL ID : 7bmh.2 (1 other biounit)

Crystal structure of a light-driven proton pump LR (Mac) from Leptosphaeria maculans

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

3 x OLA: OLEIC ACID(Non-covalent)

OLA.1: 9 residues within 4Å: Chain A: T.93, L.96, S.97, H.105, G.106, Y.134, A.135, I.138, D.139 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.96, A:A.135, A:I.138 Hydrogen bonds: A:G.106 Water bridges: A:V.107, A:Y.134 Salt bridges: A:H.105 OLA.13: 5 residues within 4Å: Chain A: D.49, S.50, K.53, T.54 Ligands: LFA.15 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:K.53 Hydrogen bonds: A:D.49, A:D.49 OLA.14: 10 residues within 4Å: Chain A: L.149, G.152, L.153, G.156, M.157, G.159, I.162, F.163 Ligands: LFA.3, LFA.5 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.149, A:L.153, A:I.162, A:F.163

21 x LFA: EICOSANE(Non-covalent)(Non-functional Binders)

LFA.2: 5 residues within 4Å: Chain A: Y.232, W.276, V.279, T.280 Ligands: LFA.23 Ligand excluded by PLIP LFA.3: 6 residues within 4Å: Chain A: A.141, P.145, L.146, L.149, I.166 Ligands: OLA.14 Ligand excluded by PLIP LFA.4: 1 residues within 4Å: Chain A: I.260 Ligand excluded by PLIP LFA.5: 4 residues within 4Å: Chain A: V.167, L.170 Ligands: LFA.12, OLA.14 Ligand excluded by PLIP LFA.6: 5 residues within 4Å: Chain A: W.190, Y.193, T.194, C.197, I.201 Ligand excluded by PLIP LFA.7: 6 residues within 4Å: Chain A: L.207, V.208, F.226, G.230, T.233, W.237 Ligand excluded by PLIP LFA.8: 2 residues within 4Å: Chain A: Y.193, C.197 Ligand excluded by PLIP LFA.9: 2 residues within 4Å: Chain A: K.53, W.56 Ligand excluded by PLIP LFA.10: 3 residues within 4Å: Chain A: A.68, L.72, A.275 Ligand excluded by PLIP LFA.11: 3 residues within 4Å: Chain A: Y.134, F.181 Ligands: LFA.12 Ligand excluded by PLIP LFA.12: 5 residues within 4Å: Chain A: A.141, L.174, L.177 Ligands: LFA.5, LFA.11 Ligand excluded by PLIP LFA.15: 2 residues within 4Å: Chain A: V.267 Ligands: OLA.13 Ligand excluded by PLIP LFA.16: 2 residues within 4Å: Chain A: V.60, I.64 Ligand excluded by PLIP LFA.17: 5 residues within 4Å: Chain A: S.66, A.67, T.70, T.88 Ligands: LFA.20 Ligand excluded by PLIP LFA.18: 2 residues within 4Å: Chain A: I.201 Ligands: LFA.21 Ligand excluded by PLIP LFA.19: 2 residues within 4Å: Chain A: A.67, W.74 Ligand excluded by PLIP LFA.20: 1 residues within 4Å: Ligands: LFA.17 Ligand excluded by PLIP LFA.21: 1 residues within 4Å: Ligands: LFA.18 Ligand excluded by PLIP LFA.22: 1 residues within 4Å: Chain A: A.71 Ligand excluded by PLIP LFA.23: 1 residues within 4Å: Ligands: LFA.2 Ligand excluded by PLIP LFA.24: 3 residues within 4Å: Chain A: W.205, V.208, L.209 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zabelskii, D. et al., Structure-based insights into evolution of rhodopsins. Commun Biol (2021)

Release Date

2021-07-07

Peptides

Opsin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Membrane

We predict this structure to be a membrane protein.
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Opsin

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