SMTL ID : 7bo7.1

CRYSTAL STRUCTURE OF THE HUMAN PRMT5:MEP50 COMPLEX with JNJB44355437

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.83 Å

Oligo State

hetero-1-1-mer

Ligands

1 x U6K: (2~{R},3~{R},4~{S},5~{R})-2-[(4~{a}~{S},7~{a}~{S})-4-azanyl-1,4,4~{a},7~{a}-tetrahydropyrrolo[2,3-d]pyrimidin-7-yl]-5-(quinolin-7-yloxymethyl)oxolane-3,4-diol(Non-covalent)

U6K.1: 26 residues within 4Å: Chain A: P.322, L.323, L.327, Y.332, F.335, K.341, Y.342, G.373, A.374, G.375, V.399, E.400, K.401, N.402, S.426, D.427, M.428, R.429, E.443, L.444, L.445, G.446, E.452, C.457, S.586, W.587 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.323, A:F.335 Hydrogen bonds: A:Y.332, A:Y.332, A:G.373, A:G.375, A:E.400, A:K.401, A:N.402, A:D.427, A:M.428, A:R.429 Water bridges: A:N.402 pi-Cation interactions: A:K.401

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.2: 8 residues within 4Å: Chain A: E.336, R.376, P.378, N.381, L.384, T.408, W.412, E.416 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.381 Salt bridges: A:R.376, A:E.416 pi-Cation interactions: A:W.412, A:W.412

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 6 residues within 4Å: Chain A: D.78, L.79, L.81, S.82, G.83, W.86 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.81 EDO.4: 7 residues within 4Å: Chain A: N.303, Y.305, E.306, H.580, S.581, P.582, G.583 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.583 EDO.5: 7 residues within 4Å: Chain A: F.48, T.88, V.91, P.128, A.129, W.160, Q.271 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.88

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.6: 5 residues within 4Å: Chain A: K.43, Q.44, E.284, F.285, C.286 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.44, A:E.284

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brown, D. et al., CRYSTAL STRUCTURE OF THE HUMAN PRMT5:MEP50 COMPLEX with JNJB44355437. To Be Published

Release Date

2022-03-02

Peptides

Protein arginine N-methyltransferase 5: A
Methylosome protein 50: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

B
BBB

Protein arginine N-methyltransferase 5

Methylosome protein 50

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