- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- hetero-4-3-mer
- Ligands
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 4 x MN: MANGANESE (II) ION(Non-covalent)
MN.2: 5 residues within 4Å:- Chain A: E.141, H.143, D.173, H.263, E.299
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.141, A:D.173, A:H.263, A:E.299, H2O.1
MN.6: 5 residues within 4Å:- Chain C: E.141, D.173, H.263, K.265, E.299
5 PLIP interactions:4 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:E.141, C:D.173, C:H.263, C:E.299, H2O.6
MN.8: 6 residues within 4Å:- Chain D: E.141, H.143, D.173, H.263, E.299
- Ligands: GOL.7
5 PLIP interactions:4 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:E.141, D:D.173, D:H.263, D:E.299, H2O.7
MN.11: 5 residues within 4Å:- Chain F: E.141, H.143, D.173, H.263, E.299
5 PLIP interactions:4 interactions with chain F, 1 Ligand-Water interactions- Metal complexes: F:E.141, F:D.173, F:H.263, F:E.299, H2O.13
- 4 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
EPE.3: 7 residues within 4Å:- Chain B: I.47, D.48, E.49, I.50, A.61, V.75, L.78
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:I.50
- Water bridges: B:H.79
EPE.4: 7 residues within 4Å:- Chain B: R.6, D.11, V.12, V.13, G.134, S.135, K.136
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:R.6, B:V.12, B:V.13, B:S.135
- Salt bridges: B:D.11, B:K.136
EPE.9: 7 residues within 4Å:- Chain E: R.6, D.11, V.12, V.13, G.134, S.135, K.136
6 PLIP interactions:6 interactions with chain E- Hydrogen bonds: E:R.6, E:V.12, E:V.13, E:S.135
- Salt bridges: E:D.11, E:K.136
EPE.12: 7 residues within 4Å:- Chain G: R.6, D.11, V.12, V.13, G.134, S.135, K.136
7 PLIP interactions:7 interactions with chain G- Hydrogen bonds: G:R.6, G:V.12, G:V.13, G:S.135, G:S.135
- Salt bridges: G:D.11, G:K.136
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mori, T. et al., C-Glycoside metabolism in the gut and in nature: Identification, characterization, structural analyses and distribution of C-C bond-cleaving enzymes. Nat Commun (2021)
- Release Date
- 2021-04-14
- Peptides
- AP_endonuc_2 domain-containing protein: ACDF
DgpB: BEG - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CD
EF
GB
BE
FG
H
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- hetero-4-3-mer
- Ligands
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 4 x MN: MANGANESE (II) ION(Non-covalent)
- 4 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mori, T. et al., C-Glycoside metabolism in the gut and in nature: Identification, characterization, structural analyses and distribution of C-C bond-cleaving enzymes. Nat Commun (2021)
- Release Date
- 2021-04-14
- Peptides
- AP_endonuc_2 domain-containing protein: ACDF
DgpB: BEG - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CD
EF
GB
BE
FG
H