SMTL ID : 7xrf.1

Crystal structaure of DgpB/C complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.14 Å

Oligo State

hetero-4-4-mer

Ligands

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: E.141, D.173, H.263, E.299 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.141, A:D.173, A:H.263, A:E.299 MN.2: 4 residues within 4Å: Chain C: E.141, D.173, H.263, E.299 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.141, C:D.173, C:H.263, C:E.299, H2O.3 MN.3: 4 residues within 4Å: Chain E: E.141, D.173, H.263, E.299 5 PLIP interactions: 4 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:E.141, E:D.173, E:H.263, E:E.299, H2O.6 MN.4: 4 residues within 4Å: Chain G: E.141, D.173, H.263, E.299 5 PLIP interactions: 4 interactions with chain G, 1 Ligand-Water interactions Metal complexes: G:E.141, G:D.173, G:H.263, G:E.299, H2O.9

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

He, P. et al., Structural mechanism of a dual-functional enzyme DgpA/B/C as both a C-glycoside cleaving enzyme and an O- to C-glycoside isomerase. Acta Pharm Sin B (2023)

Release Date

2023-02-15

Peptides

AP_endonuc_2 domain-containing protein: ACEG
DgpB: BDFH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
E

E
C

G
G

B
B

D
F

F
D

H
H

AP_endonuc_2 domain-containing protein

DgpB

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