SMTL ID : 7byf.1 (1 other biounit)

The crystal structure of mouse ORF10-Rae1-Nup98 complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-1-mer

Ligands

12 x HG: MERCURY (II) ION(Non-covalent)

HG.1: 1 residues within 4Å: Chain A: C.301 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:C.301, H2O.4, H2O.5 HG.2: 2 residues within 4Å: Chain A: C.72, H.113 No protein-ligand interaction detected (PLIP) HG.3: 3 residues within 4Å: Chain A: C.47, K.59, L.94 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.47 HG.4: 5 residues within 4Å: Chain A: Y.120, C.122, F.134, M.143, P.180 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.122 HG.6: 5 residues within 4Å: Chain C: S.81, C.375, Y.376, T.384 Ligands: HG.7 No protein-ligand interaction detected (PLIP) HG.7: 4 residues within 4Å: Chain C: T.373, C.375, T.384 Ligands: HG.6 No protein-ligand interaction detected (PLIP) HG.8: 2 residues within 4Å: Chain C: S.132, C.133 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:C.133 HG.9: 4 residues within 4Å: Chain C: G.148, L.149, C.150, Q.182 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:C.150 HG.10: 5 residues within 4Å: Chain C: K.176, T.212, C.226, L.227, N.228 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:C.226 HG.11: 6 residues within 4Å: Chain C: C.274, D.275, T.276, E.277, L.345, R.347 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:C.274 HG.12: 4 residues within 4Å: Chain C: L.324, T.372, C.385, G.386 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:C.385 HG.13: 4 residues within 4Å: Chain C: C.14, T.16, L.23, R.25 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:C.14, C:T.16

1 x NA: SODIUM ION(Non-functional Binders)

NA.5: 1 residues within 4Å: Chain C: A.173 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:A.173

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Feng, H. et al., Molecular mechanism underlying selective inhibition of mRNA nuclear export by herpesvirus protein ORF10. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2021-03-24

Peptides

mRNA export factor: A
Peptidase S59 domain-containing protein: B
10 protein: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

mRNA export factor

Peptidase S59 domain-containing protein

10 protein

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