SMTL ID : 7byf.2 (1 other biounit)

The crystal structure of mouse ORF10-Rae1-Nup98 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-1-mer

Ligands

3 x NA: SODIUM ION(Non-functional Binders)

NA.1: 2 residues within 4Å: Chain A: E.316, P.342 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.316 NA.2: 2 residues within 4Å: Chain A: D.275, L.288 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.275 NA.11: 0 residues within 4Å: (No contacts) 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.3

12 x HG: MERCURY (II) ION(Non-covalent)

HG.3: 5 residues within 4Å: Chain A: K.176, T.212, C.226, L.227, N.228 No protein-ligand interaction detected (PLIP) HG.4: 4 residues within 4Å: Chain A: C.274, T.276, L.345, L.351 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.274 HG.5: 2 residues within 4Å: Chain A: S.132, C.133 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.133 HG.6: 4 residues within 4Å: Chain A: T.373, C.375, T.384 Ligands: HG.7 No protein-ligand interaction detected (PLIP) HG.7: 5 residues within 4Å: Chain A: S.81, C.375, Y.376, T.384 Ligands: HG.6 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.375, H2O.2 HG.8: 3 residues within 4Å: Chain A: L.324, C.385, G.386 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.385, A:C.385, H2O.1 HG.9: 4 residues within 4Å: Chain A: G.148, L.149, C.150, Q.182 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:C.150, A:Q.182 HG.10: 4 residues within 4Å: Chain A: C.14, V.15, T.16, R.25 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.14 HG.12: 1 residues within 4Å: Chain B: C.301 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:C.301, H2O.7, H2O.7 HG.13: 2 residues within 4Å: Chain B: C.72, H.113 No protein-ligand interaction detected (PLIP) HG.14: 4 residues within 4Å: Chain B: F.35, C.47, K.59, L.94 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:C.47 HG.15: 5 residues within 4Å: Chain B: Y.120, C.122, F.134, M.143, P.180 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Feng, H. et al., Molecular mechanism underlying selective inhibition of mRNA nuclear export by herpesvirus protein ORF10. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2021-03-24

Peptides

10 protein: A
mRNA export factor: B
Peptidase S59 domain-containing protein: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

B
D

C
E

10 protein

mRNA export factor

Peptidase S59 domain-containing protein

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