SMTL ID : 7c9n.1

Crystal structure of SETDB1 tudor domain in complexed with Compound 1.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.47 Å

Oligo State

homo-dimer

Ligands

2 x FN9: 3,5-dimethyl-2-[[(3R,5R)-1-methyl-5-phenyl-piperidin-3-yl]amino]pyrrolo[3,2-d]pyrimidin-4-one(Non-covalent)

FN9.1: 16 residues within 4Å: Chain A: T.40, T.42, Y.98, W.105, Y.107, F.127, D.129, G.130, Y.131, W.188, E.216, W.217, I.218, R.224 Chain B: W.105 Ligands: FN9.2 8 PLIP interactions: 7 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:T.42, A:W.105, A:Y.107, A:Y.131 Hydrogen bonds: A:Y.98 Salt bridges: A:D.129 pi-Cation interactions: A:Y.98 Water bridges: B:W.105 FN9.2: 15 residues within 4Å: Chain A: W.105 Chain B: T.40, T.42, Y.98, W.105, Y.107, F.127, D.129, G.130, Y.131, E.216, W.217, I.218, R.224 Ligands: FN9.1 9 PLIP interactions: 8 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:W.105, B:W.105, B:Y.107, B:Y.131 Hydrogen bonds: B:Y.98 Water bridges: B:W.217 Salt bridges: B:D.129 pi-Cation interactions: B:Y.98 pi-Stacking: A:W.105

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guo, Y. et al., Structure-Guided Discovery of a Potent and Selective Cell-Active Inhibitor of SETDB1 Tudor Domain. Angew.Chem.Int.Ed.Engl. (2021)

Release Date

2021-04-07

Peptides

Histone-lysine N-methyltransferase SETDB1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Histone-lysine N-methyltransferase SETDB1

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