SMTL ID : 7caj.1

Crystal structure of SETDB1 Tudor domain in complexed with Compound 2.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x FNC: 3-methyl-2-[[(3R,5R)-1-methyl-5-phenyl-piperidin-3-yl]amino]-5H-pyrrolo[3,2-d]pyrimidin-4-one(Non-covalent)

FNC.1: 12 residues within 4Å: Chain A: T.42, Y.98, W.105, Y.107, F.127, D.129, G.130, Y.131, E.216, R.224 Chain B: W.105 Ligands: FNC.2 10 PLIP interactions: 9 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:T.42, A:W.105, A:Y.107, A:Y.131 Hydrogen bonds: A:Y.98, A:E.216, A:R.224 Salt bridges: A:D.129 pi-Cation interactions: A:Y.98 pi-Stacking: B:W.105 FNC.2: 12 residues within 4Å: Chain A: W.105 Chain B: T.42, Y.98, W.105, Y.107, F.127, D.129, G.130, Y.131, E.216, R.224 Ligands: FNC.1 10 PLIP interactions: 1 interactions with chain A, 9 interactions with chain B pi-Stacking: A:W.105 Hydrophobic interactions: B:T.42, B:W.105, B:Y.107, B:Y.131 Hydrogen bonds: B:Y.98, B:E.216, B:R.224 Salt bridges: B:D.129 pi-Cation interactions: B:Y.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guo, Y. et al., Structure-Guided Discovery of a Potent and Selective Cell-Active Inhibitor of SETDB1 Tudor Domain. Angew.Chem.Int.Ed.Engl. (2021)

Release Date

2021-04-07

Peptides

Histone-lysine N-methyltransferase SETDB1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
A

Histone-lysine N-methyltransferase SETDB1

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