SMTL ID : 7cfq.1

Crystal structure of WDR5 in complex with H3K4me3Q5ser peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: K.126, G.127, R.154, C.163, T.166 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:K.126, A:R.154, A:R.154, A:T.166, A:T.166 Water bridges: A:C.163, A:C.163, A:C.163

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 8 residues within 4Å: Chain A: S.50, V.51, K.52, F.263, N.265, S.306, T.307, A.308 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.51, A:N.265, A:S.306 Water bridges: A:K.221

1 x SRO: SEROTONIN(Non-covalent)

SRO.3: 5 residues within 4Å: Chain A: N.130, F.149, P.173 Chain B: E.5, T.6 6 PLIP interactions: 2 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:T.6, B:T.6, A:N.130 Hydrophobic interactions: A:P.173 pi-Stacking: A:F.149, A:F.149

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, J. et al., Structural insights into the recognition of histone H3Q5 serotonylation by WDR5. Sci Adv (2021)

Release Date

2021-07-07

Peptides

WD repeat-containing protein 5: A
H3K4me3Q5ser peptide: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

WD repeat-containing protein 5

H3K4me3Q5ser peptide

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