SMTL ID : 7cjd.1

Crystal structure of the SARS-CoV-2 PLpro C111S mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-tetramer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.190, T.192, C.193, C.225, C.227 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.190, A:C.225, A:C.227 ZN.2: 5 residues within 4Å: Chain B: C.190, T.192, C.193, C.225, C.227 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.190, B:C.225, B:C.227 ZN.4: 5 residues within 4Å: Chain C: C.190, T.192, C.193, C.225, C.227 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.190, C:C.193, C:C.225, C:C.227 ZN.5: 3 residues within 4Å: Chain D: K.191, T.192, C.227 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:K.191, D:T.192, D:C.227

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 1 residues within 4Å: Chain B: T.313 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.313, B:T.313

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gao, X. et al., Crystal structure of SARS-CoV-2 papain-like protease. Acta Pharm Sin B (2021)

Release Date

2020-09-02

Peptides

Non-structural protein 3: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
A

C
B

D
C

Non-structural protein 3