SMTL ID : 7csi.1

Aminoglycoside 2'-N-acetyltransferase from Mycolicibacterium smegmatis-Complex with Coenzyme A and Sisomicin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

homo-dimer

Ligands

2 x SIS: (1S,2S,3R,4S,6R)-4,6-diamino-3-{[(2S,3R)-3-amino-6-(aminomethyl)-3,4-dihydro-2H-pyran-2-yl]oxy}-2-hydroxycyclohexyl 3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranoside(Non-covalent)

SIS.1: 13 residues within 4Å: Chain A: F.42, D.54, F.55, D.59, S.141, A.142, S.143, D.144, E.176, D.177, R.179, W.210 Ligands: COA.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.55 Hydrogen bonds: A:D.54, A:S.141, A:D.144, A:D.144, A:D.177, A:W.210 Water bridges: A:D.59, A:S.141 SIS.3: 14 residues within 4Å: Chain B: F.42, D.54, D.59, E.106, S.141, A.142, S.143, D.144, E.176, D.177, R.179, D.208, W.210 Ligands: COA.4 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:D.54, B:S.141, B:S.141, B:E.176, B:D.177, B:D.177, B:D.208, B:W.210 Water bridges: B:D.144

2 x COA: COENZYME A(Non-covalent)

COA.2: 17 residues within 4Å: Chain A: F.42, V.108, A.109, V.110, R.115, G.116, D.117, G.118, L.119, G.120, T.121, A.142, S.143, A.146, M.149, Y.150 Ligands: SIS.1 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.42, A:V.108 Hydrogen bonds: A:V.110, A:G.116, A:G.118, A:L.119, A:G.120, A:T.121, A:S.143 Water bridges: A:G.116, A:D.117, A:D.117, A:T.121, A:T.121 COA.4: 19 residues within 4Å: Chain B: A.41, F.42, V.108, A.109, V.110, R.115, G.116, D.117, G.118, L.119, G.120, T.121, S.143, I.145, A.146, P.148, M.149, Y.150 Ligands: SIS.3 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:F.42, B:V.110, B:A.146 Hydrogen bonds: B:V.108, B:V.110, B:R.115, B:G.116, B:G.118, B:L.119, B:G.120, B:T.121, B:T.121, B:S.143 Water bridges: B:G.116, B:D.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jeong, C.S. et al., Structural and biochemical analyses of an aminoglycoside 2'-N-acetyltransferase from Mycolicibacterium smegmatis. Sci Rep (2020)

Release Date

2021-06-23

Peptides

Aminoglycoside 2'-N-acetyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Aminoglycoside 2'-N-acetyltransferase

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