SMTL ID : 7csj.1

Aminoglycoside 2'-N-acetyltransferase from Mycolicibacterium smegmatis-Complex with Coenzyme A and Gentamicin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.17 Å

Oligo State

homo-dimer

Ligands

1 x 51G: gentamicin C1(Non-covalent)

51G.1: 17 residues within 4Å: Chain A: F.42, D.53, D.54, F.55, D.59, E.106, S.141, A.142, S.143, D.144, E.176, D.177, R.179, S.180, D.208, W.210 Ligands: COA.2 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:F.42, A:F.55, A:F.55 Hydrogen bonds: A:D.53, A:D.54, A:S.141, A:A.142, A:E.176, A:E.176, A:D.177, A:D.208, A:W.210 Water bridges: A:D.59, A:A.107, A:S.141, A:D.144, A:R.205

2 x COA: COENZYME A(Non-covalent)

COA.2: 20 residues within 4Å: Chain A: A.41, F.42, V.108, A.109, V.110, R.115, G.116, D.117, G.118, L.119, G.120, T.121, S.143, I.145, A.146, P.148, M.149, Y.150, A.152 Ligands: 51G.1 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:F.42, A:V.110, A:I.145, A:A.146 Hydrogen bonds: A:V.110, A:R.115, A:G.116, A:G.116, A:G.118, A:L.119, A:G.120, A:T.121, A:T.121, A:S.143, A:S.143 Water bridges: A:D.117, A:D.117 COA.3: 14 residues within 4Å: Chain B: A.41, F.42, V.108, A.109, V.110, R.115, G.116, D.117, G.118, L.119, G.120, T.121, M.149, Y.150 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:F.42, B:V.110 Hydrogen bonds: B:V.108, B:V.110, B:G.116, B:G.116, B:G.118, B:L.119, B:G.120, B:T.121, B:T.121

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jeong, C.S. et al., Structural and biochemical analyses of an aminoglycoside 2'-N-acetyltransferase from Mycolicibacterium smegmatis. Sci Rep (2020)

Release Date

2021-06-23

Peptides

Aminoglycoside 2'-N-acetyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Aminoglycoside 2'-N-acetyltransferase

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