SMTL ID : 7cup.1

Structure of 2,5-dihydroxypridine Dioxygenase from Pseudomonas putida KT2440

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-hexamer

Ligands

6 x FE: FE (III) ION(Non-covalent)

FE.1: 4 residues within 4Å: Chain A: H.265, S.302, H.318, D.320 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.265, A:S.302, A:H.318, A:D.320, H2O.6, H2O.6 FE.2: 4 residues within 4Å: Chain B: H.265, S.302, H.318, D.320 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.265, B:S.302, B:H.318, B:D.320, H2O.15 FE.3: 5 residues within 4Å: Chain C: H.265, S.302, H.318, L.319, D.320 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:S.302, C:H.318, C:D.320, H2O.21, H2O.21 FE.4: 4 residues within 4Å: Chain D: H.265, S.302, H.318, D.320 6 PLIP interactions: 4 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:H.265, D:S.302, D:H.318, D:D.320, H2O.30, H2O.31 FE.5: 5 residues within 4Å: Chain E: H.265, S.302, H.318, L.319, D.320 6 PLIP interactions: 4 interactions with chain E, 2 Ligand-Water interactions Metal complexes: E:H.265, E:S.302, E:H.318, E:D.320, H2O.42, H2O.44 FE.6: 5 residues within 4Å: Chain F: H.265, S.302, H.318, L.319, D.320 6 PLIP interactions: 4 interactions with chain F, 2 Ligand-Water interactions Metal complexes: F:H.265, F:S.302, F:H.318, F:D.320, H2O.51, H2O.57

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, G.Q. et al., 2,5-dihydroxypridine Dioxygenase in complex with 2,5-dihydroxypridine and product N-formylmaleamic acid. Nat Commun (2020)

Release Date

2020-12-16

Peptides

2,5-dihydroxypyridine 5,6-dioxygenase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

2,5-dihydroxypyridine 5,6-dioxygenase

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