SMTL ID : 7cv8.1

RNA methyltransferase METTL4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.37 Å

Oligo State

monomer

Ligands

1 x SFG: SINEFUNGIN(Non-covalent)

SFG.1: 18 residues within 4Å: Chain A: I.141, S.210, D.211, L.212, D.233, P.235, P.248, L.250, S.362, R.363, K.364, E.385, F.387, R.389, W.398, N.400, E.401, F.405 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:P.235 Hydrogen bonds: A:D.211, A:L.212, A:D.233, A:S.362, A:S.362, A:K.364, A:E.385, A:E.385, A:N.400, A:N.400, A:E.401 Water bridges: A:D.211, A:D.211, A:D.233, A:R.389, A:R.389, A:E.390, A:E.390 Salt bridges: A:K.364, A:R.389

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: P.365, P.366, I.367, G.368, E.385, W.395 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:I.367, A:G.368, A:E.385 Water bridges: A:P.365, A:P.366, A:D.369 GOL.3: 5 residues within 4Å: Chain A: E.224, E.225, G.226, H.265, A.266 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.226, A:A.266 GOL.4: 3 residues within 4Å: Chain A: F.97, K.350, N.351 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.351

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Luo, Q. et al., Structural insights into molecular mechanism for N6-adenosine methylation by MT-A70 family methyltransferase METTL4. Nat Commun (2022)

Release Date

2021-09-01

Peptides

Methyltransferase-like protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Methyltransferase-like protein 2

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