SMTL ID : 7cwl.1

SARS-CoV-2 spike protein and P17 fab complex with one RBD in close state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-mer

Ligands

27 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: T.108, N.234 Ligand excluded by PLIP NAG.2: 1 residues within 4Å: Chain A: N.603 Ligand excluded by PLIP NAG.3: 1 residues within 4Å: Chain A: N.616 Ligand excluded by PLIP NAG.4: 1 residues within 4Å: Chain A: N.657 Ligand excluded by PLIP NAG.5: 2 residues within 4Å: Chain A: N.709, N.710 Ligand excluded by PLIP NAG.6: 3 residues within 4Å: Chain A: N.717, N.919, L.922 Ligand excluded by PLIP NAG.7: 3 residues within 4Å: Chain A: N.801, S.803, Q.804 Ligand excluded by PLIP NAG.8: 4 residues within 4Å: Chain A: A.706, E.1072, K.1073, N.1074 Ligand excluded by PLIP NAG.9: 1 residues within 4Å: Chain A: N.1134 Ligand excluded by PLIP NAG.10: 4 residues within 4Å: Chain B: T.108, T.109, N.234, T.236 Ligand excluded by PLIP NAG.11: 2 residues within 4Å: Chain B: T.307, N.603 Ligand excluded by PLIP NAG.12: 2 residues within 4Å: Chain B: N.616, Q.644 Ligand excluded by PLIP NAG.13: 1 residues within 4Å: Chain B: N.657 Ligand excluded by PLIP NAG.14: 2 residues within 4Å: Chain B: N.709, N.710 Ligand excluded by PLIP NAG.15: 2 residues within 4Å: Chain B: N.717, L.922 Ligand excluded by PLIP NAG.16: 2 residues within 4Å: Chain B: N.801, S.803 Ligand excluded by PLIP NAG.17: 4 residues within 4Å: Chain B: A.706, E.1072, K.1073, N.1074 Ligand excluded by PLIP NAG.18: 1 residues within 4Å: Chain B: N.1134 Ligand excluded by PLIP NAG.19: 3 residues within 4Å: Chain C: G.232, I.233, N.234 Ligand excluded by PLIP NAG.20: 1 residues within 4Å: Chain C: N.603 Ligand excluded by PLIP NAG.21: 4 residues within 4Å: Chain C: N.616, C.617, T.618, Q.644 Ligand excluded by PLIP NAG.22: 1 residues within 4Å: Chain C: N.657 Ligand excluded by PLIP NAG.23: 3 residues within 4Å: Chain A: D.796 Chain C: N.709, G.1131 Ligand excluded by PLIP NAG.24: 3 residues within 4Å: Chain C: N.717, L.922, Q.1071 Ligand excluded by PLIP NAG.25: 3 residues within 4Å: Chain C: N.801, S.803, Q.804 Ligand excluded by PLIP NAG.26: 2 residues within 4Å: Chain C: A.706, N.1074 Ligand excluded by PLIP NAG.27: 1 residues within 4Å: Chain C: N.1134 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yao, H. et al., Rational development of a human antibody cocktail that deploys multiple functions to confer Pan-SARS-CoVs protection. Cell Res. (2021)

Release Date

2021-01-27

Peptides

Spike glycoprotein: ABC
Fab P17 heavy chain: DEF
Fab P17 light chain: GHI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
G

E
H

F
I

G
L

H
J

I
K

Spike glycoprotein

Fab P17 heavy chain

Fab P17 light chain

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