SMTL ID : 7n62.1

SARS-CoV-2 Spike (2P) in complex with C12C9 Fab (NTD local reconstruction)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: N.17, T.20 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.17 NAG.2: 2 residues within 4Å: Chain A: Y.28, N.61 No protein-ligand interaction detected (PLIP) NAG.3: 2 residues within 4Å: Chain A: N.122, N.125 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:N.122 NAG.4: 3 residues within 4Å: Chain A: E.132, N.164, N.165 No protein-ligand interaction detected (PLIP) NAG.5: 3 residues within 4Å: Chain A: T.108, N.234, T.236 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tong, P. et al., Memory B cell repertoire for recognition of evolving SARS-CoV-2 spike. Biorxiv (2021)

Release Date

2021-08-04

Peptides

Spike glycoprotein: A
C12C9 Fab heavy chain: B
C12C9 Fab light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

Spike glycoprotein

C12C9 Fab heavy chain

C12C9 Fab light chain

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