SMTL ID : 7cxo.1

Crystal structure of Arabinose isomerase from hybrid AI10

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

homo-hexamer

Ligands

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: H.282, G.283, K.375 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.282, A:K.375 GOL.3: 3 residues within 4Å: Chain B: H.282, G.283, K.375 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:H.282, B:G.283, B:K.375 GOL.5: 3 residues within 4Å: Chain C: H.282, G.283, K.375 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:H.282, C:G.283, C:K.375 GOL.7: 4 residues within 4Å: Chain D: H.282, G.283, L.284, K.375 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:G.283, D:K.375 Water bridges: D:L.284 GOL.9: 3 residues within 4Å: Chain E: H.282, G.283, K.375 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:H.282, E:K.375

6 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 4 residues within 4Å: Chain A: E.305, E.332, H.349, H.449 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.305, A:E.305, A:E.332, A:H.349, A:H.449 MN.4: 4 residues within 4Å: Chain B: E.305, E.332, H.349, H.449 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.305, B:E.305, B:E.332, B:H.349, B:H.449 MN.6: 5 residues within 4Å: Chain C: E.305, E.332, H.349, H.448, H.449 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:E.305, C:E.305, C:E.332, C:H.349, C:H.449 MN.8: 4 residues within 4Å: Chain D: E.305, E.332, H.349, H.449 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:E.305, D:E.332, D:H.349, D:H.449, H2O.3 MN.10: 5 residues within 4Å: Chain E: E.305, E.332, H.349, H.448, H.449 5 PLIP interactions: 4 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:E.305, E:E.332, E:H.349, E:H.449, H2O.4 MN.11: 4 residues within 4Å: Chain F: E.305, E.332, H.349, H.449 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:E.305, F:E.332, F:H.349, F:H.449

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hoang, N.K.Q. et al., Crystal structure of Arabinose isomerase from hyper thermophilic hybrid AI10. To Be Published

Release Date

2021-09-08

Peptides

L-arabinose isomerase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

L-arabinose isomerase

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