SMTL ID : 7cz0.2 (3 other biounits)

Crystal structure of a thermostable green fluorescent protein (TGP) with a synthetic nanobody (Sb92)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.77 Å

Oligo State

hetero-1-1-mer

Ligands

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: P.140, S.141, D.191, H.192 Ligands: GOL.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.142, A:H.192 GOL.2: 5 residues within 4Å: Chain A: D.191, H.192, H.211, E.213 Ligands: GOL.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.191, A:H.192, A:E.213 GOL.4: 8 residues within 4Å: Chain A: K.10, K.12, E.109, G.110, D.111, C.112 Chain B: Y.41, W.51 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.10, A:E.109, A:D.111 GOL.5: 5 residues within 4Å: Chain A: V.45, E.46, E.47, G.48, A.49 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.48, A:A.49 GOL.6: 6 residues within 4Å: Chain A: D.42, L.43, S.198, K.205, V.206, R.207 No protein-ligand interaction detected (PLIP)

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 1 residues within 4Å: Chain A: Y.35 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cai, H. et al., An improved fluorescent protein tag and its nanobodies for membrane protein expression, stability assay, and purification. To Be Published

Release Date

2021-09-08

Peptides

Thermostable green fluorescent protein (TGP): A
Synthetic nanobody (Sybody) 92 recognizing the thermostable green fluorescent protein (TGP): B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
F

Thermostable green fluorescent protein (TGP)

Synthetic nanobody (Sybody) 92 recognizing the thermostable green fluorescent protein (TGP)

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