- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-trimer
- Ligands
- 33 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
- 4 x PTY: PHOSPHATIDYLETHANOLAMINE(Non-covalent)
PTY.12: 8 residues within 4Å:- Chain A: L.888, F.891, W.901, L.1037, V.1038, R.1040
- Chain C: I.19
- Ligands: LMT.40
8 PLIP interactions:7 interactions with chain A, 1 interactions with chain C- Hydrophobic interactions: A:L.888, A:L.888, A:F.891, A:W.901, A:W.901, A:W.901, C:I.19
- Salt bridges: A:R.1040
PTY.32: 8 residues within 4Å:- Chain A: I.19, L.497
- Chain B: F.891, W.901, R.1035, V.1038, T.1039
- Ligands: LMT.3
7 PLIP interactions:5 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:F.891, B:W.901, B:W.901, A:I.19, A:L.497
- Hydrogen bonds: B:R.1035, B:R.1035
PTY.33: 8 residues within 4Å:- Chain B: L.20, I.27, P.30, L.31
- Chain C: P.457, F.460, V.882, L.889
9 PLIP interactions:5 interactions with chain C, 4 interactions with chain B- Hydrophobic interactions: C:P.457, C:F.460, C:F.460, C:V.882, C:L.889, B:L.20, B:I.27, B:L.31
- Hydrogen bonds: B:P.30
PTY.49: 15 residues within 4Å:- Chain A: L.449, C.452, A.453, V.456, P.457, F.460, T.878, I.881, L.889
- Chain C: L.31, N.301, D.304, Y.387, L.388
- Ligands: LMT.45
16 PLIP interactions:8 interactions with chain A, 8 interactions with chain C- Hydrophobic interactions: A:V.456, A:P.457, A:F.460, A:F.460, A:F.460, A:T.878, A:I.881, A:L.889, C:L.31, C:L.31, C:Y.387, C:L.388
- Hydrogen bonds: C:D.304
- Water bridges: C:P.30, C:N.301, C:N.301
- 19 x GOL: GLYCEROL(Non-functional Binders)
GOL.13: 3 residues within 4Å:- Chain A: R.310, A.314, W.326
Ligand excluded by PLIPGOL.14: 6 residues within 4Å:- Chain A: P.172, G.173, A.300, N.301, D.304, L.305
Ligand excluded by PLIPGOL.15: 3 residues within 4Å:- Chain A: S.702, N.705, A.706
Ligand excluded by PLIPGOL.16: 8 residues within 4Å:- Chain A: V.584, L.621, N.622, A.623, T.632, G.633, T.634, F.669
Ligand excluded by PLIPGOL.17: 8 residues within 4Å:- Chain A: L.162, D.166, R.170, R.771
- Chain B: N.824, G.825, Y.826
- Ligands: LMT.10
Ligand excluded by PLIPGOL.18: 8 residues within 4Å:- Chain A: A.118, R.119, L.120, R.125
- Chain C: Q.216, R.242, N.764, D.765
Ligand excluded by PLIPGOL.19: 8 residues within 4Å:- Chain A: R.157, S.182, G.183, E.184, G.276, S.277, R.774
- Ligands: LMT.5
Ligand excluded by PLIPGOL.20: 8 residues within 4Å:- Chain A: Q.216, R.242, Y.762, N.764, D.765
- Chain B: R.119, L.120, P.121
Ligand excluded by PLIPGOL.21: 6 residues within 4Å:- Chain A: A.198, R.199, K.255, A.257, Q.258, V.263
Ligand excluded by PLIPGOL.34: 5 residues within 4Å:- Chain B: Q.435, R.438, E.957, Q.961
- Ligands: LMT.25
Ligand excluded by PLIPGOL.35: 2 residues within 4Å:- Chain B: K.963, E.967
Ligand excluded by PLIPGOL.36: 2 residues within 4Å:- Chain B: Q.258, D.259
Ligand excluded by PLIPGOL.50: 5 residues within 4Å:- Chain C: R.310, W.326, A.327, A.328, Y.614
Ligand excluded by PLIPGOL.51: 3 residues within 4Å:- Chain C: E.246, R.270, I.271
Ligand excluded by PLIPGOL.52: 6 residues within 4Å:- Chain C: R.956, E.959, I.960, Y.1031, R.1035
- Ligands: LMT.39
Ligand excluded by PLIPGOL.53: 3 residues within 4Å:- Chain C: G.696, Y.697, G.698
Ligand excluded by PLIPGOL.54: 6 residues within 4Å:- Chain C: V.704, S.708, F.719, P.720, S.722, L.831
Ligand excluded by PLIPGOL.55: 1 residues within 4Å:- Chain C: N.525
Ligand excluded by PLIPGOL.56: 6 residues within 4Å:- Chain C: E.439, F.954, E.957, L.958, Q.961, L.975
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bharatham, N. et al., Structure and function relationship of OqxB efflux pump from Klebsiella pneumoniae. Nat Commun (2021)
- Release Date
- 2021-09-22
- Peptides
- Efflux pump membrane transporter: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-trimer
- Ligands
- 33 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
- 4 x PTY: PHOSPHATIDYLETHANOLAMINE(Non-covalent)
- 19 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bharatham, N. et al., Structure and function relationship of OqxB efflux pump from Klebsiella pneumoniae. Nat Commun (2021)
- Release Date
- 2021-09-22
- Peptides
- Efflux pump membrane transporter: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C - Membrane
-
We predict this structure to be a membrane protein.