SMTL ID : 7d2t.1 (1 other biounit)

Crystal structure of Rsu1/PINCH1_LIM45C complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-mer

Ligands

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.1: 3 residues within 4Å: Chain A: P.84, T.85, Q.86 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.85, A:Q.86, A:Q.86 Water bridges: A:E.82, A:L.83

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: N.101, R.102, Y.123, N.124, N.125 Ligands: GOL.3, GOL.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.102, A:Y.123, A:N.125 GOL.3: 5 residues within 4Å: Chain A: E.81, R.102, N.104, N.125 Ligands: GOL.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.81, A:R.102, A:N.125 GOL.4: 8 residues within 4Å: Chain A: N.78, Q.79, M.100, N.101, R.102, Y.123 Chain B: P.125 Ligands: GOL.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.102, A:R.102 Water bridges: A:Q.79, A:Y.123 GOL.9: 7 residues within 4Å: Chain B: W.29, H.33, F.34, V.35, G.53, L.54, A.55 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:H.33, B:V.35, B:V.35, B:G.53, B:A.55

4 x ZN: ZINC ION(Non-covalent)

ZN.5: 5 residues within 4Å: Chain B: C.95, T.97, C.98, C.117, C.120 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.95, B:C.98, B:C.117, B:C.120 ZN.6: 4 residues within 4Å: Chain B: C.69, C.72, C.89, C.92 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.69, B:C.72, B:C.89, B:C.92 ZN.7: 4 residues within 4Å: Chain B: C.36, C.39, C.57, H.60 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.36, B:C.39, B:C.57, B:H.60 ZN.8: 4 residues within 4Å: Chain B: C.10, C.13, H.30, H.33 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.10, B:C.13, B:H.30, B:H.33

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.10: 3 residues within 4Å: Chain B: E.110, Y.121, K.133 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.110 Water bridges: B:E.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, H. et al., Complex structures of Rsu1 and PINCH1 reveal a regulatory mechanism of the ILK/PINCH/Parvin complex for F-actin dynamics. Elife (2021)

Release Date

2021-02-24

Peptides

Ras suppressor protein 1: A
LIM and senescent cell antigen-like-containing domain protein 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ras suppressor protein 1

LIM and senescent cell antigen-like-containing domain protein 1

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