- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.10 Å
- Oligo State
- homo-dimer
- Ligands
- 10 x CA: CALCIUM ION(Non-covalent)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
CL.6: 4 residues within 4Å:- Chain A: R.8
- Chain B: S.492, K.498, D.568
Ligand excluded by PLIPCL.7: 1 residues within 4Å:- Chain A: K.505
Ligand excluded by PLIPCL.17: 4 residues within 4Å:- Chain A: S.492, K.498, D.568
- Chain B: R.8
Ligand excluded by PLIPCL.18: 1 residues within 4Å:- Chain B: K.505
Ligand excluded by PLIP- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.8: 4 residues within 4Å:- Chain A: E.41, V.42, D.64, T.65
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:V.42
EDO.9: 5 residues within 4Å:- Chain A: A.21, D.116, I.117, S.118, R.186
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.116, A:R.186
EDO.19: 4 residues within 4Å:- Chain B: E.41, V.42, D.64, T.65
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:V.42
EDO.20: 5 residues within 4Å:- Chain B: A.21, D.116, I.117, S.118, R.186
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:D.116, B:R.186
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.10: 5 residues within 4Å:- Chain A: I.6, R.8, L.26, D.28
- Chain B: R.552
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.8, A:R.8
GOL.11: 4 residues within 4Å:- Chain A: L.254, S.255, F.256, R.394
No protein-ligand interaction detected (PLIP)GOL.21: 5 residues within 4Å:- Chain A: R.552
- Chain B: I.6, R.8, L.26, D.28
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.8, B:R.8, B:D.28
GOL.22: 4 residues within 4Å:- Chain B: L.254, S.255, F.256, R.394
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Funabashi, K. et al., Structures of human peptidylarginine deiminase type III provide insights into substrate recognition and inhibitor design. Arch.Biochem.Biophys. (2021)
- Release Date
- 2021-06-02
- Peptides
- Protein-arginine deiminase type-3: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.10 Å
- Oligo State
- homo-dimer
- Ligands
- 10 x CA: CALCIUM ION(Non-covalent)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Funabashi, K. et al., Structures of human peptidylarginine deiminase type III provide insights into substrate recognition and inhibitor design. Arch.Biochem.Biophys. (2021)
- Release Date
- 2021-06-02
- Peptides
- Protein-arginine deiminase type-3: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
C