- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.10 Å
- Oligo State
- homo-dimer
- Ligands
- 10 x CA: CALCIUM ION(Non-covalent)
- 9 x CL: CHLORIDE ION(Non-functional Binders)
CL.6: 2 residues within 4Å:- Chain A: L.537, T.575
Ligand excluded by PLIPCL.7: 2 residues within 4Å:- Chain A: G.22, N.81
Ligand excluded by PLIPCL.8: 4 residues within 4Å:- Chain A: S.492, A.495, K.498
- Ligands: GOL.26
Ligand excluded by PLIPCL.9: 2 residues within 4Å:- Chain A: K.505
- Chain B: V.33
Ligand excluded by PLIPCL.19: 2 residues within 4Å:- Chain B: V.7, Y.30
Ligand excluded by PLIPCL.20: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.21: 4 residues within 4Å:- Chain B: S.492, A.495, K.498, D.568
Ligand excluded by PLIPCL.22: 2 residues within 4Å:- Chain B: L.537, T.575
Ligand excluded by PLIPCL.23: 2 residues within 4Å:- Chain A: V.33
- Chain B: K.505
Ligand excluded by PLIP- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.10: 5 residues within 4Å:- Chain A: A.21, D.116, I.117, S.118, R.186
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.118, A:R.186
EDO.11: 4 residues within 4Å:- Chain A: E.41, V.42, D.64, T.65
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.41, A:V.42
EDO.24: 4 residues within 4Å:- Chain B: D.116, I.117, S.118, R.186
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:D.116, B:S.118, B:R.186, B:D.287
EDO.25: 4 residues within 4Å:- Chain B: E.41, V.42, D.64, T.65
No protein-ligand interaction detected (PLIP)- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.12: 4 residues within 4Å:- Chain A: R.8, D.28
- Chain B: R.552, E.563
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.8, A:R.8, A:D.28
GOL.13: 4 residues within 4Å:- Chain A: L.254, S.255, F.256, R.394
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:F.256, A:R.394, A:R.394
GOL.26: 7 residues within 4Å:- Chain A: R.552, E.563, D.568
- Chain B: R.8, D.28, E.75
- Ligands: CL.8
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.8, B:R.8, B:E.75
GOL.27: 4 residues within 4Å:- Chain B: L.254, S.255, F.256, R.394
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:F.256, B:R.394, B:R.394
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Funabashi, K. et al., Structures of human peptidylarginine deiminase type III provide insights into substrate recognition and inhibitor design. Arch.Biochem.Biophys. (2021)
- Release Date
- 2021-06-02
- Peptides
- Protein-arginine deiminase type-3: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.10 Å
- Oligo State
- homo-dimer
- Ligands
- 10 x CA: CALCIUM ION(Non-covalent)
- 9 x CL: CHLORIDE ION(Non-functional Binders)
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Funabashi, K. et al., Structures of human peptidylarginine deiminase type III provide insights into substrate recognition and inhibitor design. Arch.Biochem.Biophys. (2021)
- Release Date
- 2021-06-02
- Peptides
- Protein-arginine deiminase type-3: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
A