SMTL ID : 7daz.1

Crystal structure of Drosophila melanogaster Noppera-bo, glutathione S-transferase epsilon 14 (DmGSTE14), in TDP015- and GSH-bound form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.64 Å

Oligo State

homo-dimer

Ligands

2 x GSH: GLUTATHIONE(Non-covalent)

GSH.1: 16 residues within 4Å: Chain A: S.21, P.22, P.23, L.45, Q.50, F.51, H.62, S.63, V.64, P.65, D.76, S.77, H.78, F.117 Chain B: S.114 Ligands: H29.3 11 PLIP interactions: 1 interactions with chain B, 10 interactions with chain A Hydrogen bonds: B:S.114, A:Q.50, A:V.64, A:V.64, A:D.76, A:S.77 Hydrophobic interactions: A:F.117 Water bridges: A:V.64, A:T.75 Salt bridges: A:H.62, A:H.78 GSH.4: 16 residues within 4Å: Chain A: S.114 Chain B: S.21, P.22, P.23, L.45, Q.50, F.51, H.62, S.63, V.64, P.65, D.76, S.77, H.78, F.117 Ligands: H29.6 10 PLIP interactions: 9 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:F.117 Hydrogen bonds: B:Q.50, B:V.64, B:V.64, B:D.76, B:S.77, A:S.114 Water bridges: B:H.78 Salt bridges: B:H.62, B:H.78

4 x H29: 6-(6,7-dihydro-4H-thieno[3,2-c]pyridin-5-yl)pyridin-3-amine(Non-covalent)

H29.2: 8 residues within 4Å: Chain A: D.120, S.121, M.124, S.125, V.128, L.215, M.219 Ligands: H29.3 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:M.124, A:V.128, A:L.215 H29.3: 9 residues within 4Å: Chain A: R.20, L.45, F.46, V.128, L.215, T.218, M.219 Ligands: GSH.1, H29.2 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.215, A:T.218 pi-Stacking: A:F.46 H29.5: 9 residues within 4Å: Chain B: D.120, S.121, M.124, S.125, V.128, R.129, L.215, M.219 Ligands: H29.6 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:M.124, B:V.128, B:V.128, B:L.215 H29.6: 8 residues within 4Å: Chain B: R.20, L.45, F.46, L.215, T.218, M.219 Ligands: GSH.4, H29.5 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:L.45, B:L.215, B:T.218 pi-Stacking: B:F.46

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Koiwai, K. et al., Non-steroidal inhibitors of Drosophila melanogaster steroidogenic glutathione S -transferase Noppera-bo. J Pestic Sci (2021)

Release Date

2021-02-10

Peptides

Glutathione S-transferase E14: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glutathione S-transferase E14

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