SMTL ID : 7db0.1

Crystal structure of Drosophila melanogaster Noppera-bo, glutathione S-transferase epsilon 14 (DmGSTE14), in dimedone-bound form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.66 Å

Oligo State

homo-dimer

Ligands

2 x DC1: 5,5-DIMETHYLCYCLOHEXANE-1,3-DIONE(Non-covalent)

DC1.1: 9 residues within 4Å: Chain A: R.20, P.22, F.46, F.117, D.120, S.121, M.124, T.179, L.215 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.46, A:F.117, A:M.124 DC1.10: 9 residues within 4Å: Chain B: R.20, P.22, F.46, F.117, D.120, S.121, M.124, T.179, L.215 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:F.46, B:F.117

12 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 6 residues within 4Å: Chain A: R.153, Y.154, N.157 Chain B: A.57, L.58, P.60 1 PLIP interactions: 1 interactions with chain A pi-Cation interactions: A:Y.154 DMS.3: 5 residues within 4Å: Chain A: D.159, F.160, R.194, W.195, A.198 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:D.159 DMS.4: 5 residues within 4Å: Chain A: L.33, L.34, D.89, S.93, L.94 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:D.89 DMS.5: 4 residues within 4Å: Chain A: D.35, I.36, D.37, F.88 No protein-ligand interaction detected (PLIP) DMS.6: 1 residues within 4Å: Chain A: G.91 No protein-ligand interaction detected (PLIP) DMS.7: 8 residues within 4Å: Chain A: H.69, G.70, D.71, L.72, H.83, K.87 Chain B: H.99, A.100 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.87 pi-Cation interactions: A:H.69 DMS.8: 5 residues within 4Å: Chain A: S.114, F.115, R.118, R.119, K.143 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Water bridges: A:R.119, B:Q.61 DMS.9: 4 residues within 4Å: Chain A: C.113, F.117, R.118 Chain B: S.114 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.118 DMS.11: 4 residues within 4Å: Chain B: E.152, Q.188, F.189, P.190 No protein-ligand interaction detected (PLIP) DMS.12: 4 residues within 4Å: Chain B: Y.17, E.19, L.28, L.40 2 PLIP interactions: 2 interactions with chain B Water bridges: B:E.19 Salt bridges: B:E.19 DMS.13: 7 residues within 4Å: Chain A: H.99, A.100 Chain B: H.69, G.70, L.72, H.83, K.87 2 PLIP interactions: 2 interactions with chain B Water bridges: B:D.71 pi-Cation interactions: B:H.69 DMS.14: 8 residues within 4Å: Chain B: P.23, S.63, V.64, P.65, T.75, D.76, S.77, F.117 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:D.76

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Koiwai, K. et al., Non-steroidal inhibitors of Drosophila melanogaster steroidogenic glutathione S -transferase Noppera-bo. J Pestic Sci (2021)

Release Date

2021-02-10

Peptides

Glutathione S-transferase E14: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glutathione S-transferase E14

Related Entries With Identical Sequence