SMTL ID : 7db4.1

Crystal structure of Drosophila melanogaster Noppera-bo, glutathione S-transferase epsilon 14 (DmGSTE14), in TDP012- and glutathione-bound form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

homo-dimer

Ligands

2 x H2C: 1-[(4-fluorophenyl)methyl]-2,2-bis(oxidanylidene)thieno[3,2-c][1,2]thiazin-4-one(Non-covalent)

H2C.1: 13 residues within 4Å: Chain A: R.20, S.21, P.22, L.45, F.46, F.117, S.121, M.124, S.125, L.215, T.218, M.219 Ligands: GSH.2 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:R.20, A:L.45, A:M.124, A:L.215, A:T.218 H2C.3: 13 residues within 4Å: Chain B: R.20, S.21, P.22, L.45, F.46, F.117, S.121, M.124, S.125, L.215, T.218, M.219 Ligands: GSH.4 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:L.45, B:M.124, B:L.215, B:T.218

2 x GSH: GLUTATHIONE(Non-covalent)

GSH.2: 15 residues within 4Å: Chain A: S.21, P.23, L.45, Q.50, F.51, H.62, S.63, V.64, P.65, D.76, S.77, H.78, F.117 Chain B: S.114 Ligands: H2C.1 10 PLIP interactions: 8 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:Q.50, A:V.64, A:V.64, A:S.77, B:S.114, B:S.114 Water bridges: A:V.64, A:P.65 Salt bridges: A:H.62, A:H.78 GSH.4: 15 residues within 4Å: Chain A: S.114 Chain B: S.21, P.23, L.45, Q.50, F.51, H.62, S.63, V.64, P.65, D.76, S.77, H.78, F.117 Ligands: H2C.3 11 PLIP interactions: 9 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:Q.50, B:V.64, B:V.64, B:S.77, A:S.114, A:S.114 Water bridges: B:H.78, B:E.112, B:E.112 Salt bridges: B:H.62, B:H.78

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Koiwai, K. et al., Non-steroidal inhibitors of Drosophila melanogaster steroidogenic glutathione S -transferase Noppera-bo. J Pestic Sci (2021)

Release Date

2021-02-10

Peptides

Glutathione S-transferase E14: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glutathione S-transferase E14

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