- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.86 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x TYR: TYROSINE(Non-covalent)
- 6 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 8 residues within 4Å:- Chain A: A.64, G.66, F.123, R.173, Y.175, N.188, Y.270, L.576
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:R.173, A:Y.175, A:N.188
- Water bridges: A:G.67, A:G.67
GOL.4: 5 residues within 4Å:- Chain A: Q.257, P.258, G.260, D.263, R.636
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:P.258, A:G.260, A:D.263, A:R.636, A:R.636
GOL.5: 6 residues within 4Å:- Chain A: H.84, Y.87, A.324, S.325, N.328
- Ligands: TYR.1
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.328
- Water bridges: A:N.328
GOL.6: 5 residues within 4Å:- Chain A: E.165, F.170, R.171, E.190, R.430
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:R.171, A:E.190
- Water bridges: A:E.165, A:G.169, A:F.170, A:E.190, A:K.192, A:K.192
GOL.9: 6 residues within 4Å:- Chain B: H.84, Y.87, A.321, A.324, N.328
- Ligands: TYR.7
3 PLIP interactions:1 Ligand-Ligand interactions, 2 interactions with chain B- Water bridges: Y.7, B:H.84, B:K.206
GOL.10: 7 residues within 4Å:- Chain B: Q.31, S.178, Q.557, A.560, V.570, Y.571, P.572
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:S.178, B:Q.557, B:Y.571
- Water bridges: B:Q.31, B:N.181
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nakamura, A. et al., Structural basis for an exceptionally strong preference for asparagine residue at the S2 subsite of Stenotrophomonas maltophilia dipeptidyl peptidase 7. Sci Rep (2021)
- Release Date
- 2021-11-03
- Peptides
- Dipeptidyl-peptidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.86 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x TYR: TYROSINE(Non-covalent)
- 6 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nakamura, A. et al., Structural basis for an exceptionally strong preference for asparagine residue at the S2 subsite of Stenotrophomonas maltophilia dipeptidyl peptidase 7. Sci Rep (2021)
- Release Date
- 2021-11-03
- Peptides
- Dipeptidyl-peptidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B