SMTL ID : 8grt.1

Small Dipeptide Analogues developed by Co-crystal Structure of Stenotrophomonas maltophilia Dipeptidyl Peptidase 7

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.59 Å

Oligo State

homo-dimer

Ligands

2 x ALC: 2-AMINO-3-CYCLOHEXYL-PROPIONIC ACID(Non-covalent)

ALC.1: 9 residues within 4Å: Chain A: H.84, N.213, W.214, R.218, D.222, N.328, F.671, D.672 Ligands: TYR.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.213, A:N.328, A:D.672 ALC.3: 10 residues within 4Å: Chain B: H.84, K.206, N.213, W.214, R.218, D.222, N.328, F.671, D.672 Ligands: TYR.4 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:K.206 Hydrogen bonds: B:N.213, B:N.328, B:D.672

2 x TYR: TYROSINE(Non-covalent)

TYR.2: 13 residues within 4Å: Chain A: H.84, W.214, I.650, T.651, G.652, G.653, N.654, S.655, F.671, D.672, G.673, S.677 Ligands: ALC.1 11 PLIP interactions: 11 interactions with chain A, Hydrophobic interactions: A:W.214, A:W.214, A:I.650, A:I.650 Hydrogen bonds: A:G.653, A:N.654, A:S.655, A:S.655, A:F.671, A:S.677 Salt bridges: A:H.84 TYR.4: 12 residues within 4Å: Chain B: H.84, W.214, I.650, T.651, G.652, G.653, S.655, F.671, D.672, G.673, S.677 Ligands: ALC.3 11 PLIP interactions: 11 interactions with chain B, Hydrophobic interactions: B:W.214, B:W.214, B:I.650, B:I.650 Hydrogen bonds: B:G.653, B:S.655, B:S.655, B:F.671, B:S.677 Water bridges: B:S.677 Salt bridges: B:H.84

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Koushi, H. et al., Small Dipeptide Analogues Generated by Co-crystal Structure of Bacterial Dipeptidyl Peptidase 7 to Defeat Stenotrophomonas maltophilia. To Be Published

Release Date

2023-09-06

Peptides

Dipeptidyl-peptidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Dipeptidyl-peptidase

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